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What form are your labels in? If in freesurfer .label format, then you
can convert them to an annotation (mris_label2annot), then use annot2std
to create an average annotation in fsaverage (standard) space using your
subject, you can then map the annot to any subject
On 4/20/2023 12:29 PM, Carlos Alcocer wrote:
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I am basically looking for a way to create an average of the labels
for the L subcallosal cingulate cortex (SCC) and then make an average
of the labels for the R SCC across all subjects and use these 2
average labels as a mask to see if the average label L SCC and average
label of R SCC aligns well with with the actual location of the L and
R SCC for each individual subject. Do you know of a better way to do this?
On Thu, Apr 20, 2023 at 9:19 AM Huang, Yujing
<yhuan...@mgh.harvard.edu> wrote:
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Hi Carlos,
mri_concat concatenates input .mgz files.
The following command will output C.mgz with A.mgz as the first
frame, and B.mgz as the second frame, assuming both A and B have
only one frame.
mri_concat --i A.mgz --i B.mgz --o C.mgz
I’m not sure that is what you are looking for.
Best,
Yujing
*From:* freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> *On Behalf Of *Carlos Alcocer
*Sent:* Wednesday, April 19, 2023 1:02 PM
*To:* Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
*Subject:* [Freesurfer] creating average labels
* External Email - Use Caution *
Good afternoon,
I would like to verify that the subcallosal cingulate cortex (SCC)
segmentation of my subjects are correct. I want to do this by
creating an average label of the left SCC and an average label of
the right SCC which I can then map onto each subject.
If I save these labels from each subject as a volume (.mgz) and
then run mri_concat on the left SCC labels (.mgz) and then on the
right SCC labels (.mgz), would this accomplish my desired goal?
Tks,
Carlos
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Carlos Alcocer
B.A. Neurobiology and Behavior, Cornell University, 2019
818-746-0302
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