External Email - Use Caution I am basically looking for a way to create an average of the labels for the L subcallosal cingulate cortex (SCC) and then make an average of the labels for the R SCC across all subjects and use these 2 average labels as a mask to see if the average label L SCC and average label of R SCC aligns well with with the actual location of the L and R SCC for each individual subject. Do you know of a better way to do this?
On Thu, Apr 20, 2023 at 9:19 AM Huang, Yujing <yhuan...@mgh.harvard.edu> wrote: > External Email - Use Caution > > Hi Carlos, > > > > mri_concat concatenates input .mgz files. > > > > The following command will output C.mgz with A.mgz as the first frame, and > B.mgz as the second frame, assuming both A and B have only one frame. > > mri_concat --i A.mgz --i B.mgz --o C.mgz > > > > I’m not sure that is what you are looking for. > > > > Best, > > > > Yujing > > > > > > *From:* freesurfer-boun...@nmr.mgh.harvard.edu < > freesurfer-boun...@nmr.mgh.harvard.edu> *On Behalf Of *Carlos Alcocer > *Sent:* Wednesday, April 19, 2023 1:02 PM > *To:* Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> > *Subject:* [Freesurfer] creating average labels > > > > * External Email - Use Caution * > > Good afternoon, > > > > I would like to verify that the subcallosal cingulate cortex (SCC) > segmentation of my subjects are correct. I want to do this by creating an > average label of the left SCC and an average label of the right SCC which I > can then map onto each subject. > > > > If I save these labels from each subject as a volume (.mgz) and then run > mri_concat on the left SCC labels (.mgz) and then on the right SCC labels > (.mgz), would this accomplish my desired goal? > > > > Tks, > > > > Carlos > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://secure-web.cisco.com/1woH-7I1iI8jy49UxI2T2XJlNeSSdGVsY4IBFUUGhxOAxPK7rJ8nSKVJaIQhdvMJyQg_9YfQGe9EQPSjhTTNJWBjnmgHgPIBcSyxiXmE833bNWTLnfr7erepKzCqPOTGP6weFblfgkD_cpnX8x4-9AEdLyWgxdI_uN5PzpR3NXxTVj7oQoZsvx1fPEy-WF4xdNiJaDsH9BP-nh5ptcbhDSEDYFFiboC4A96t04BaCdcokiqAiPjgDtWdHVjULN-XH3Xa1U2BT5JqJfj6EE28tBZHDBJmvXeEOUJUdqwFzIkQkGNOSVJmcr6PAfsplHuwp/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer > The information in this e-mail is intended only for the person to whom it > is addressed. If you believe this e-mail was sent to you in error and the > e-mail contains patient information, please contact the Mass General > Brigham Compliance HelpLine at > https://secure-web.cisco.com/1GS07NEXkXwlLogxjj80mBImEu4X1pw97cO01n0kM2da3QNcGfEj1qXlOdoxCPUN9s3jlIlf_N8V6YQts6uv0jDMCppWabJxFKyXgW_Bfop0OebJAqzh9kaTQ--TB0ZMYPJXcR1CVj1KaHyMA46so_m1sJ0f-yurVRbhM5uGclAHTCYI0yCqj0H5wAJzz4FmKVmJMZGXbb92Bxjlnvpqvtw58dqQ3GuqspGU_QGu4cp4rtf8CSLgcBif9q_YVrnxxfFijOx4ZB4yubtFrvDAVU6EHZcBUKtT2oA4fvUt69KYuP58KWcCZ1T6wQkAQ7uxu/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline > < > https://secure-web.cisco.com/1GS07NEXkXwlLogxjj80mBImEu4X1pw97cO01n0kM2da3QNcGfEj1qXlOdoxCPUN9s3jlIlf_N8V6YQts6uv0jDMCppWabJxFKyXgW_Bfop0OebJAqzh9kaTQ--TB0ZMYPJXcR1CVj1KaHyMA46so_m1sJ0f-yurVRbhM5uGclAHTCYI0yCqj0H5wAJzz4FmKVmJMZGXbb92Bxjlnvpqvtw58dqQ3GuqspGU_QGu4cp4rtf8CSLgcBif9q_YVrnxxfFijOx4ZB4yubtFrvDAVU6EHZcBUKtT2oA4fvUt69KYuP58KWcCZ1T6wQkAQ7uxu/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline> > . > Please note that this e-mail is not secure (encrypted). If you do not > wish to continue communication over unencrypted e-mail, please notify the > sender of this message immediately. Continuing to send or respond to > e-mail after receiving this message means you understand and accept this > risk and wish to continue to communicate over unencrypted e-mail. > -- Carlos Alcocer B.A. Neurobiology and Behavior, Cornell University, 2019 818-746-0302
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