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Hi Carlos,
mri_concat concatenates input .mgz files.
The following command will output C.mgz with A.mgz as the first frame, and
B.mgz as the second frame, assuming both A and B have only one frame.
mri_concat --i A.mgz --i B.mgz --o C.mgz
I’m not sure that is what you are looking for.
Best,
Yujing
From: freesurfer-boun...@nmr.mgh.harvard.edu
<freesurfer-boun...@nmr.mgh.harvard.edu> On Behalf Of Carlos Alcocer
Sent: Wednesday, April 19, 2023 1:02 PM
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Subject: [Freesurfer] creating average labels
External Email - Use Caution
Good afternoon,
I would like to verify that the subcallosal cingulate cortex (SCC) segmentation
of my subjects are correct. I want to do this by creating an average label of
the left SCC and an average label of the right SCC which I can then map onto
each subject.
If I save these labels from each subject as a volume (.mgz) and then run
mri_concat on the left SCC labels (.mgz) and then on the right SCC labels
(.mgz), would this accomplish my desired goal?
Tks,
Carlos
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