External Email - Use Caution Thank you for clarifying.
Elmira On Wed, Apr 26, 2023 at 6:44 PM Douglas N. Greve <dgr...@mgh.harvard.edu> wrote: > External Email - Use Caution > > Yes, this is the expected behavior, ie, it should cover only subcortical > GM regions. It is expected that cortical regions will be handled with the > surface based analysis. You can recombine the results at the end with > vlrmerge. > > On 4/26/2023 12:22 PM, Elmira Hassanzadeh wrote: > > External Email - Use Caution > Hi everyone, > > We preprocessed resting-state data with preproc-sess. In the output, I > noticed although *fmcpr.nii* covers the whole brain,* > fmcpr.sm6.mni305.2mm.nii* is only covering brain stem+cerebellum > (screenshots attached). > > Any clue what went wrong? This is an example of the command we ran for one > of our subjects(R19): > > *preproc-sess -surface R19 lhrh -s R19 -fwhm 6 -fsd rest -mni305 -per-run* > > Thanks, > Elmira > > > > _______________________________________________ > Freesurfer mailing listfreesur...@nmr.mgh.harvard.edu*MailScanner has > detected a possible fraud attempt from "secure-web.cisco.com" claiming to be* > https://secure-web.cisco.com/1Uzg3LPu9X1F35NwosJx_24s8iPCGVL7jJNjb5CVt1NL4lQP9AElnPgRl54lgCTJH6OWzP95dkcF1cyrSu0PqSyGfEtW3BXWKQN3T4DwqRBXPn4RWviNSNNTwixqomXcQLPoOYFfdL4S1aOToh8IfORI_Rcbrzs-VGN01dwtUHnpkm_RsQBNbj3MHjHyMooKoJy-qo8OtAp8dFiLH8FvFizAjKfqfLCZdxoAMIDCuKXKS_RXIFJz_owgXwtYiNwK4mKMnPd7zMwOoAqTAZz115qBiy80K7kW786RG54DQ1ZiRZdEm8G6SGtqdobq7o3Wzigdqw246GmEFa7kxoEq80w/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer > > <https://secure-web.cisco.com/1Bn6UimaGvW8mLEOhv7dUVk1A0R3eXORtVXABjDALDctuthvQr2Izd6Qw37i13jHqNXL2Pwz15wWi-BVsUW9BC6wIKJJ9CQlrXzjrroeHMa0zIvlX_FSgjCokeYKsW_DuffhRc0ZJtQm5A1gRvJ-mpK3wMAlvFKQN2UFEO-FjDpkvYL1tsWSXIPppar3AXvtfw3_tBHlwWBG9MLl8K_CsK8wmanueTXclMIXJ1N45U5xZ18A02wDa20WL3NP4mNdfqu3EAjofNLvoSZHqG7GNNg/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer> > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://secure-web.cisco.com/1Uzg3LPu9X1F35NwosJx_24s8iPCGVL7jJNjb5CVt1NL4lQP9AElnPgRl54lgCTJH6OWzP95dkcF1cyrSu0PqSyGfEtW3BXWKQN3T4DwqRBXPn4RWviNSNNTwixqomXcQLPoOYFfdL4S1aOToh8IfORI_Rcbrzs-VGN01dwtUHnpkm_RsQBNbj3MHjHyMooKoJy-qo8OtAp8dFiLH8FvFizAjKfqfLCZdxoAMIDCuKXKS_RXIFJz_owgXwtYiNwK4mKMnPd7zMwOoAqTAZz115qBiy80K7kW786RG54DQ1ZiRZdEm8G6SGtqdobq7o3Wzigdqw246GmEFa7kxoEq80w/https%3A%2F%2Fmail.nmr.mgh.harvard.edu%2Fmailman%2Flistinfo%2Ffreesurfer > The information in this e-mail is intended only for the person to whom it > is addressed. If you believe this e-mail was sent to you in error and the > e-mail contains patient information, please contact the Mass General > Brigham Compliance HelpLine at > https://secure-web.cisco.com/1Boe85GGZ1qJA1_UolHdU27Y1fVOhxHlvHwJVsptkXlhCp1LuGpXTlRj1Ajhf3fBEQXgOF-8AHgLjkjAOiFyzu1uDsajmOLjj-ITMtyzD2fbKcCyUdvy1FYCiTOZyN5HXAi5GAj4WJRC1mTmbh5RzSzNTUTe7O-h1eEhMUCW1xbxgtZtK9LD9Jxf1qtxe7cDolsi50zO6OVWl-Br4FwuqvquqasDKdCmeO6Ijc84qTc-8CBQWSk-XU18AyE3nug7QIoAgMeqoK1qeih7cmV-VT_dVq5mfzhyxSTQgbG6DBOBFmsd8iEtqqMVhDMvAANdwgOPVgEPCpq9QSAwd4VZFbg/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline > < > https://secure-web.cisco.com/1Boe85GGZ1qJA1_UolHdU27Y1fVOhxHlvHwJVsptkXlhCp1LuGpXTlRj1Ajhf3fBEQXgOF-8AHgLjkjAOiFyzu1uDsajmOLjj-ITMtyzD2fbKcCyUdvy1FYCiTOZyN5HXAi5GAj4WJRC1mTmbh5RzSzNTUTe7O-h1eEhMUCW1xbxgtZtK9LD9Jxf1qtxe7cDolsi50zO6OVWl-Br4FwuqvquqasDKdCmeO6Ijc84qTc-8CBQWSk-XU18AyE3nug7QIoAgMeqoK1qeih7cmV-VT_dVq5mfzhyxSTQgbG6DBOBFmsd8iEtqqMVhDMvAANdwgOPVgEPCpq9QSAwd4VZFbg/https%3A%2F%2Fwww.massgeneralbrigham.org%2Fcomplianceline> > . >
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