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Yes, this is the expected behavior, ie, it should cover only subcortical
GM regions. It is expected that cortical regions will be handled with
the surface based analysis. You can recombine the results at the end
with vlrmerge.
On 4/26/2023 12:22 PM, Elmira Hassanzadeh wrote:
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Hi everyone,
We preprocessed resting-state data with preproc-sess. In the output, I
noticed although *fmcpr.nii* covers the whole
brain,*fmcpr.sm6.mni305.2mm.nii* is only covering brain
stem+cerebellum (screenshots attached).
Any clue what went wrong? This is an example of the command we ran for
one of our subjects(R19):
*preproc-sess -surface R19 lhrh -s R19 -fwhm 6 -fsd rest -mni305 -per-run*
Thanks,
Elmira
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