External Email - Use Caution
Thank you! --Donna
From: <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of "Douglas N. Greve"
<dgr...@mgh.harvard.edu>
Reply-To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Date: Sunday, May 16, 2021 at 9:59 AM
To: "freesurfer@nmr.mgh.harvard.edu" <freesurfer@nmr.mgh.harvard.edu>
Subject: Re: [Freesurfer] Sulcus represented in wm.mgz filled in lh.white
* External Email - Caution *
It is possible. Try running defect-seg to see where the defects are. Run it
with --help to get more info
On 5/13/2021 2:20 PM, Dierker, Donna wrote:
External Email - Use Caution
External Email - Use Caution
Hi freesurfer experts,
I have some cases where sulci near the occipital pole are reflected in the
wm.mgz, but are filled in the white surface.
Attached is a capture showing the sulcus near the image center, where the
crosshairs are located.
Might the topology fixer have filled in this sulcus, to reduce topological
errors?
This was generated using recon-all -all, freesurfer 6.0, ubuntu 18.04.3.
Thanks,
Donna
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