It is possible. Try running defect-seg to see where the defects are. Run
it with --help to get more info
On 5/13/2021 2:20 PM, Dierker, Donna wrote:
External Email - Use Caution
External Email - Use Caution
Hi freesurfer experts,
I have some cases where sulci near the occipital pole are reflected in
the wm.mgz, but are filled in the white surface.
Attached is a capture showing the sulcus near the image center, where
the crosshairs are located.
Might the topology fixer have filled in this sulcus, to reduce
topological errors?
This was generated using recon-all -all, freesurfer 6.0, ubuntu 18.04.3.
Thanks,
Donna
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