External Email - Use Caution Hi, I just wanted to check in on the progress of this thread. Could you let me know if you had the chance to take a look at the scan I sent? I'm unfortunately having the same problem with multiple scans so if I could get some help, I'd really appreciate it. If I somehow failed to send the files please let me know as well. Thank you! Monica
On Fri, Jan 31, 2020 at 11:37 AM Monica Bondy <bondy...@umn.edu> wrote: > Thank you so much! I just sent the gzipped subject directory > *subjectdir.gz. * > My main concern is that a lot of the lateral gray matter isn't included. > Here are some Talairach coordinates that illustrate the areas I'm concerned > about: (-67 -27 -9) (-65 -33 22). > > Let me know if it didn't send properly or if I can do anything else. > > Thanks again, > Monica > > On Fri, Jan 31, 2020 at 10:34 AM Bruce Fischl <fis...@nmr.mgh.harvard.edu> > wrote: > >> Hi Monica >> >> sure, if you tar and gzip the entire subject dir and ftp it to us, then >> send us a description that includes the voxel coords of where you think >> things should be more accurate we will take a look >> >> cheers >> Bruce >> On Fri, 31 Jan 2020, >> Monica Bondy wrote: >> >> > >> > External Email - Use Caution >> > >> > Dear Freesurfer experts, >> > I was wondering if I could get some help with a problem that I keep >> > experiencing. For some of the patients, their gray matter is not >> properly >> > included in the pial surface. I have tried tkmregister and using control >> > points but neither have been successful. >> > I have read on a separate thread that editing the wm.mgz may be helpful >> but >> > could I have some guidance on this please? Also, I know it can be >> difficult >> > to tell the problem based on the description so please let me know if I >> can >> > send something over to help. I'm still very much learning how to work >> > freesurfer so I really appreciate your help. >> > (Note: I am using version 5.3) >> > >> > Thank you, >> > Monica >> > >> >_______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
