External Email - Use Caution Thank you so much! I just sent the gzipped subject directory *subjectdir.gz. * My main concern is that a lot of the lateral gray matter isn't included. Here are some Talairach coordinates that illustrate the areas I'm concerned about: (-67 -27 -9) (-65 -33 22).
Let me know if it didn't send properly or if I can do anything else. Thanks again, Monica On Fri, Jan 31, 2020 at 10:34 AM Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > Hi Monica > > sure, if you tar and gzip the entire subject dir and ftp it to us, then > send us a description that includes the voxel coords of where you think > things should be more accurate we will take a look > > cheers > Bruce > On Fri, 31 Jan 2020, > Monica Bondy wrote: > > > > > External Email - Use Caution > > > > Dear Freesurfer experts, > > I was wondering if I could get some help with a problem that I keep > > experiencing. For some of the patients, their gray matter is not properly > > included in the pial surface. I have tried tkmregister and using control > > points but neither have been successful. > > I have read on a separate thread that editing the wm.mgz may be helpful > but > > could I have some guidance on this please? Also, I know it can be > difficult > > to tell the problem based on the description so please let me know if I > can > > send something over to help. I'm still very much learning how to work > > freesurfer so I really appreciate your help. > > (Note: I am using version 5.3) > > > > Thank you, > > Monica > > > >_______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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