External Email - Use Caution Afaik SurfStat is not maintained anymore and I think it's been this way for quite a while now. Maybe someone else knows better?
The website is at http://www.math.mcgill.ca/keith/surfstat/ and it says 'Updated 26 September 2008'. I'm not sure whether that's really true, but at least for the last 14 months (the only time frame I know about), there have not been any changes to that website or any new releases of SurfStat. Tim > On May 23, 2019 at 4:36 PM Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > > > Hi Loic > > sorry, can you ask whoever maintains surfstat? Or maybe someone else on the > list knows? I don't. You can label surfaces manually with the dev version > of freeview if you want. > > cheers > Bruce > > > On Thu, 23 May 2019, Loïc > Daumail wrote: > > > > > External Email - Use Caution > > > > Hi Bruce, > > > > I am coming back to this request as I was wondering: > > would it be possible to load freesurfer surface atlases in surfstat in > > order to label my surfaces? > > Is their format compatible? I saw surfstat only accepts a limited array of > > formats... > > > > Thanks, > > Best, > > > > Loïc > > > > Le lun. 20 mai 2019 à 16:15, Bruce Fischl <fis...@nmr.mgh.harvard.edu> a > > écrit : > > sure. All the fsaverages are in the same space (they are subsets of > > fsaverage) > > On Mon, 20 May 2019, Loïc Daumail wrote: > > > > > > > > External Email - Use Caution > > > > > > Hi Bruce, > > > > > > Thanks for your response. Is it also fine for fsaverage5 surface or > > I need to switch > > my data to > > > fsaverage? > > > > > > Thanks, > > > > > > Sincerely, > > > > > > Loïc > > > > > > Le lun. 20 mai 2019 à 15:52, Bruce Fischl > > <fis...@nmr.mgh.harvard.edu> a écrit : > > > Hi Loic > > > > > > if you are on the fsaverage surface you can save the > > -log10(p) values > > > using save_mgh.m, then load them in freeview and threshold > > them or > > > whatever > > > > > > cheers > > > Bruce > > > On Mon, 20 May 2019, Loïc Daumail wrote: > > > > > > > > > > > External Email - Use Caution > > > > > > > > Also, one more thing: > > > > > > > > My data is on fsaverage5 resolution. > > > > > > > > Thanks in advance, > > > > > > > > Sincerely, > > > > > > > > Loïc > > > > > > > > Le lun. 20 mai 2019 à 09:49, Loïc Daumail > > <loic.daum...@gmail.com> a écrit : > > > > Dear Freesurfer community, > > > > > > > > I obtained score matrices of surfaces after performing > > diffusion embedding map > > on fMRI > > > data. > > > > > > > > I am now using the SurfStat toolbox(Matlab) in order to > > obtain p-value maps to > > compare > > > between > > > > two groups. > > > > > > > > After obtaining the p-value map, I would like to label the > > surface in order to > > > identify the > > > > regions of significant difference between both groups. > > > > > > > > Would it be possible to use Freview in order to do it? > > > > If so, which format should I use for my SurfStatP output > > p-value map? > > > > How would you do it, (tools to convert into a specific > > format, surfaces and > > atlas to > > > load on > > > > Freeview, which format for those ones)? > > > > I would be very grateful if you could detail a bit, as I am > > new to these > > tools! > > > > > > > > Thanks in advance, > > > > > > > > Loïc Daumail > > > > > > > > > > > >_______________________________________________ > > > Freesurfer mailing list > > > Freesurfer@nmr.mgh.harvard.edu > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > > > >_______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > >_______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Dr. Tim Schäfer Postdoc Computational Neuroimaging Department of Child and Adolescent Psychiatry, Psychosomatics and Psychotherapy University Hospital Frankfurt, Goethe University Frankfurt am Main, Germany _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
