External Email - Use Caution Hi Bruce,
I am coming back to this request as I was wondering: would it be possible to load freesurfer surface atlases in surfstat in order to label my surfaces? Is their format compatible? I saw surfstat only accepts a limited array of formats... Thanks, Best, Loïc Le lun. 20 mai 2019 à 16:15, Bruce Fischl <fis...@nmr.mgh.harvard.edu> a écrit : > sure. All the fsaverages are in the same space (they are subsets of > fsaverage) > On Mon, 20 May 2019, Loïc Daumail wrote: > > > > > External Email - Use Caution > > > > Hi Bruce, > > > > Thanks for your response. Is it also fine for fsaverage5 surface or I > need to switch my data to > > fsaverage? > > > > Thanks, > > > > Sincerely, > > > > Loïc > > > > Le lun. 20 mai 2019 à 15:52, Bruce Fischl <fis...@nmr.mgh.harvard.edu> > a écrit : > > Hi Loic > > > > if you are on the fsaverage surface you can save the -log10(p) > values > > using save_mgh.m, then load them in freeview and threshold them or > > whatever > > > > cheers > > Bruce > > On Mon, 20 May 2019, Loïc Daumail wrote: > > > > > > > > External Email - Use Caution > > > > > > Also, one more thing: > > > > > > My data is on fsaverage5 resolution. > > > > > > Thanks in advance, > > > > > > Sincerely, > > > > > > Loïc > > > > > > Le lun. 20 mai 2019 à 09:49, Loïc Daumail < > loic.daum...@gmail.com> a écrit : > > > Dear Freesurfer community, > > > > > > I obtained score matrices of surfaces after performing diffusion > embedding map on fMRI > > data. > > > > > > I am now using the SurfStat toolbox(Matlab) in order to obtain > p-value maps to compare > > between > > > two groups. > > > > > > After obtaining the p-value map, I would like to label the > surface in order to > > identify the > > > regions of significant difference between both groups. > > > > > > Would it be possible to use Freview in order to do it? > > > If so, which format should I use for my SurfStatP output p-value > map? > > > How would you do it, (tools to convert into a specific format, > surfaces and atlas to > > load on > > > Freeview, which format for those ones)? > > > I would be very grateful if you could detail a bit, as I am new > to these tools! > > > > > > Thanks in advance, > > > > > > Loïc Daumail > > > > > > > > >_______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > >_______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
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