Which template surface? fsaverage? Are you using the 2mm MNI template for VBM? If so, then you can use mri_label2vol specifying the desikan annotation as the --annot and using $FREESURFER_HOME/average/mni152.register.dat as the registration file.
On 10/11/2018 11:42 AM, ece ulug wrote: > > External Email - Use Caution > > Thanks for your response; > > > I had already mapped normalized volume to template surface, so now I > want to map the desikan atlas into the vbm volume. > > > > ------------------------------------------------------------------------ > *Gönderen:* Greve, Douglas N.,Ph.D. <dgr...@mgh.harvard.edu> adına > freesurfer-boun...@nmr.mgh.harvard.edu > <freesurfer-boun...@nmr.mgh.harvard.edu> > *Gönderildi:* 11 Ekim 2018 Perşembe 18:26 > *Kime:* freesurfer@nmr.mgh.harvard.edu > *Konu:* Re: [Freesurfer] Ynt: Desikan Atlas in MNI Space > I'm not sure what you are trying to do. Do you want to map the vbm > results to the surface and visualize the aparc (desikan atlas) or do you > want to map the aparc into the vbm volume? > > On 10/11/2018 09:59 AM, ece ulug wrote: > > > > External Email - Use Caution > > > > Hi, > > > > May be i cannot tell well, > > > > > > I would like to use the Desikan atlas, which is a surface-based atlas > > normally, as a volume template. > > > > Generally Desikan_surface.gii file is accesible. Can I visualize VBM > > results correctly in for instances SPMglass brain using Desikan > Atlas.nii? > > > > > > Ece > > > > > > ------------------------------------------------------------------------ > > *Gönderen:* ece ulug <eceulu...@hotmail.com> > > *Gönderildi:* 10 Ekim 2018 Çarşamba 12:27 > > *Kime:* freesurfer@nmr.mgh.harvard.edu > > *Konu:* Desikan Atlas in MNI Space > >> /Dear All,/ > >> / > >> I am a master student in Turkey. For my thesis; I have to do exactly > >> this; > >> > >> / > >> /*Desikan atlas (which I have in the tailarach space) in the MNI > >> space, as a file (Desikan_mni.nii). I am aware that transforming from > >> one space to the other is not a very good idea but nevertheless I > >> would like to test some computations. > >> > >> Anyone can attach/send a link/know of if exists such a file? the > >> aparc+aseg.mgz in fsaverage is in mni305 space. will that work? > >> */ > >> /This is a mail dated 2014, freesurfer maillist, and I find this via > >> internet./ > >> /Desikan Atlas 'aparc+aseg.mgz' or .nii format where should I look for > >> these file? / > >> /And what is your opinion, is it good idea? / > >> /(To transform Desikan atlas to mni space for visualization VBM > >> results?) / > >> /Thanks in advance/ > >> /E. Ece Uluğ/ > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > Freesurfer Info Page - Harvard University > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> > mail.nmr.mgh.harvard.edu > To see the collection of prior postings to the list, visit the > Freesurfer Archives.. A searchable archive which of messages PRIOR to > March 2004 is at this site A searchable archive which includes > messages AFTER March 2004 is at this site. Using Freesurfer > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
