External Email - Use Caution
Oh, yep, sorry about that. I copy the list on this e-mail, and attach the
log. I think the list
blocks attachments, but if anyone wants to see full log I can send it.
Thanks to all,
-Eli
____________________________________________________________________________________________________
From: Bruce Fischl <fis...@nmr.mgh.harvard.edu>
Sent: Tuesday, July 31, 2018 2:03:05 PM
To: Rockers, Elijah D.
Subject: Re: Surface editing: recon-all exited with errors
can you cc the list on these emails so others can help?
On Tue, 31 Jul 2018,
Rockers, Elijah D. wrote:
>
> External Email - Use Caution
>
> The recon-all -make all command finished relatively quickly, still with
> errors. It's still showing
> the same errors, and I have attached the new recon-all.log.
>
> ___________________________________________________________________________________________________
_
> From: Rockers, Elijah D.
> Sent: Tuesday, July 31, 2018 12:32:11 PM
> To: Bruce Fischl
> Subject: Re: Surface editing: recon-all exited with errors
>
> Odd. I assumed the individual recon-all commands in the log are just
> what is reported by the
general
> pipeline, since I definitely did not issue all those commands
> separately. I just used the
recon-all
> -make all command after editing. In anycase, I will run it again to see
> if anything changes, but I
> think that would be surprising.
>
>
> Thanks again
>
> - Eli
>
> ___________________________________________________________________________________________________
_
> From: Bruce Fischl <fis...@nmr.mgh.harvard.edu>
> Sent: Tuesday, July 31, 2018 11:52:59 AM
> To: Rockers, Elijah D.
> Subject: Re: Surface editing: recon-all exited with errors
> Hi Eli
>
> it's hard for me to tell since you have so many individual recon-all
> commands, but it looks like you didn't recreate all the surfaces after
> editing. Errors like thiss one:
>
> mrisReadTriangleFile(../surf/lh.sphere.reg): surface doesn't match
> ../surf/lh.white.preaparc
>
> typically mean something hasn't been recreated properly. Try running
> recon-all -make all
>
> cheers
> Bruce
>
>
> On Tue,
> 31 Jul 2018, Rockers, Elijah D. wrote:
>
> >
> > External Email - Use Caution
> >
> > Hi Bruce,
> >
> >
> > I have attached the recon-all.log, regarding an exit with ERRORS that
> > occured after manually
> editing
> > the surface. Thanks for taking a look.
> >
> >
> > Also, I double checked - the original recon-all command finished with
> > no errors. So it seems the
> > message occurs after surface editing. But the new reconstructed
> > surfaces appear accurate, at
least
> > with respect to gray and white matter boundaries. Let me know if
> > there's anything else you need.
> >
> >
> > Thanks again,
> >
> > - Eli
> >
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