did you run
recon-all -s <subject name> -make all
?
I don't see it in the log
On Tue, 31 Jul 2018, Rockers, Elijah
D. wrote:
External Email - Use Caution
Oh, yep, sorry about that. I copy the list on this e-mail, and attach the log.
I think the list
blocks attachments, but if anyone wants to see full log I can send it.
Thanks to all,
-Eli
____________________________________________________________________________________________________
From: Bruce Fischl <fis...@nmr.mgh.harvard.edu>
Sent: Tuesday, July 31, 2018 2:03:05 PM
To: Rockers, Elijah D.
Subject: Re: Surface editing: recon-all exited with errors
can you cc the list on these emails so others can help?
On Tue, 31 Jul 2018,
Rockers, Elijah D. wrote:
>
> External Email - Use Caution
>
> The recon-all -make all command finished relatively quickly, still with
errors. It's still showing
> the same errors, and I have attached the new recon-all.log.
>
>___________________________________________________________________________________________________
_
> From: Rockers, Elijah D.
> Sent: Tuesday, July 31, 2018 12:32:11 PM
> To: Bruce Fischl
> Subject: Re: Surface editing: recon-all exited with errors
>
> Odd. I assumed the individual recon-all commands in the log are just what is
reported by the
general
> pipeline, since I definitely did not issue all those commands separately. I
just used the
recon-all
> -make all command after editing. In anycase, I will run it again to see if
anything changes, but I
> think that would be surprising.
>
>
> Thanks again
>
> - Eli
>
>___________________________________________________________________________________________________
_
> From: Bruce Fischl <fis...@nmr.mgh.harvard.edu>
> Sent: Tuesday, July 31, 2018 11:52:59 AM
> To: Rockers, Elijah D.
> Subject: Re: Surface editing: recon-all exited with errors
> Hi Eli
>
> it's hard for me to tell since you have so many individual recon-all
> commands, but it looks like you didn't recreate all the surfaces after
> editing. Errors like thiss one:
>
> mrisReadTriangleFile(../surf/lh.sphere.reg): surface doesn't match
> ../surf/lh.white.preaparc
>
> typically mean something hasn't been recreated properly. Try running
> recon-all -make all
>
> cheers
> Bruce
>
>
> On Tue,
> 31 Jul 2018, Rockers, Elijah D. wrote:
>
> >
> > External Email - Use Caution
> >
> > Hi Bruce,
> >
> >
> > I have attached the recon-all.log, regarding an exit with ERRORS that
occured after manually
> editing
> > the surface. Thanks for taking a look.
> >
> >
> > Also, I double checked - the original recon-all command finished with no
errors. So it seems the
> > message occurs after surface editing. But the new reconstructed surfaces
appear accurate, at
least
> > with respect to gray and white matter boundaries. Let me know if there's
anything else you need.
> >
> >
> > Thanks again,
> >
> > - Eli
> >
> > Houston Methodist. Leading Medicine.
> >
> > Houston Methodist is ranked by U.S. News & World Report as the No. 1
hospital in Texas for
patient
> > care. Houston Methodist is nationally ranked in 8 specialties and is
designated as a Magnet
> hospital
> > for excellence in nursing. Visit us at http://houstonmethodist.org. Follow
usathttps://urldefense.proofpoint.com/v2/url?u=http-3A__twitter.com_MethodistHosp&d=DwIFAw&c=QmPtDiFi
xE
>jkMvDKaP3E2Vb9C2z4M0PdarxyAHQ2iDQ&r=xbyrBxm81l6mG_XEX66jgCNTXfK3eVo30T9sVQVTz1Q&m=ds98HqtzhWqTZ4zNG
> seN-axVe5fM_ZPQ9W9OHoSzLLo&s=5CE2NSVpAt16S_bmsgO_Okvmb5bkLvXMIjkxSTQ2C5g&e=
>
>andhttps://urldefense.proofpoint.com/v2/url?u=http-3A__facebook.com_HoustonMethodist&d=DwIFAw&c=QmP
tDi
>FixEjkMvDKaP3E2Vb9C2z4M0PdarxyAHQ2iDQ&r=xbyrBxm81l6mG_XEX66jgCNTXfK3eVo30T9sVQVTz1Q&m=ds98HqtzhWqTZ
>
4zNGseN-axVe5fM_ZPQ9W9OHoSzLLo&s=1x_6X2u7_1TSprfJDQX2_pJs3OEQcXqNYjVB7pVhpzE&e=.
> >
> > ***CONFIDENTIALITY NOTICE*** This e-mail is the property of Houston
Methodist and/or its
relevant
> > affiliates and may contain restricted and privileged material for the sole
use of the intended
> > recipient(s). Any review, use, distribution or disclosure by others is
strictly prohibited. If
you
> > are not the intended recipient (or authorized to receive for the
recipient), please contact the
> > sender and delete all copies of the message. Thank you.
> >
> >
> >
>
>
> The information in this e-mail is intended only for the person to whom it is
> addressed. If you believe this e-mail was sent to you in error and the e-mail
> contains patient information, please contact the Partners Compliance HelpLine
at
>https://urldefense.proofpoint.com/v2/url?u=http-3A__www.partners.org_complianceline&d=DwIFAw&c=QmPt
>DiFixEjkMvDKaP3E2Vb9C2z4M0PdarxyAHQ2iDQ&r=xbyrBxm81l6mG_XEX66jgCNTXfK3eVo30T9sVQVTz1Q&m=ds98HqtzhWq
>
TZ4zNGseN-axVe5fM_ZPQ9W9OHoSzLLo&s=xCXJrzgzXHHAcYBpjDRMUejaZuRv3TRvaTInF4j-rTw&e=
. If the e-mail
> was sent to you in error
> but does not contain patient information, please contact the sender and
properly
> dispose of the e-mail.
>
> Houston Methodist. Leading Medicine.
>
> Houston Methodist is ranked by U.S. News & World Report as the No. 1 hospital
in Texas for patient
> care. Houston Methodist is nationally ranked in 8 specialties and is
designated as a Magnet
hospital
> for excellence in nursing. Visit us at http://houstonmethodist.org. Follow us
athttps://urldefense.proofpoint.com/v2/url?u=http-3A__twitter.com_MethodistHosp&d=DwIFbA&c=QmPtDiFixE
jkMvDKaP3E2Vb9C2z4M0PdarxyAHQ2iDQ&r=xbyrBxm81l6mG_XEX66jgCNTXfK3eVo30T9sVQVTz1Q&m=v8b-fopH40l9QFjmU
UagXcSud1KidLOGC6r-yJIaMgs&s=n10KnHWoZmKWhUnIST22Wd_-CpO6CKEhs_Px28LwPgA&e=
>
andhttps://urldefense.proofpoint.com/v2/url?u=http-3A__facebook.com_HoustonMethodist&d=DwIFbA&c=QmPtDi
FixEjkMvDKaP3E2Vb9C2z4M0PdarxyAHQ2iDQ&r=xbyrBxm81l6mG_XEX66jgCNTXfK3eVo30T9sVQVTz1Q&m=v8b-fopH40l9Q
FjmUUagXcSud1KidLOGC6r-yJIaMgs&s=GwxcOWoaL8fedVWq0c-38F-3JnNPyXb_RB7i0S5ceqM&e=.
>
> ***CONFIDENTIALITY NOTICE*** This e-mail is the property of Houston Methodist
and/or its relevant
> affiliates and may contain restricted and privileged material for the sole
use of the intended
> recipient(s). Any review, use, distribution or disclosure by others is
strictly prohibited. If you
> are not the intended recipient (or authorized to receive for the recipient),
please contact the
> sender and delete all copies of the message. Thank you.
>
>
>
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
https://urldefense.proofpoint.com/v2/url?u=http-3A__www.partners.org_complianceline&d=DwIFbA&c=QmPt
DiFixEjkMvDKaP3E2Vb9C2z4M0PdarxyAHQ2iDQ&r=xbyrBxm81l6mG_XEX66jgCNTXfK3eVo30T9sVQVTz1Q&m=v8b-fopH40l
9QFjmUUagXcSud1KidLOGC6r-yJIaMgs&s=A0SZGR2sDIg_jnaRfyaqVBWfrNkK2oR3NjXd7PNgtAQ&e=
. If the e-mail
was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
Houston Methodist. Leading Medicine.
Houston Methodist is ranked by U.S. News & World Report as the No. 1 hospital
in Texas for patient
care. Houston Methodist is nationally ranked in 8 specialties and is designated
as a Magnet hospital
for excellence in nursing. Visit us at houstonmethodist.org. Follow us at
twitter.com/MethodistHosp
and facebook.com/HoustonMethodist.
***CONFIDENTIALITY NOTICE*** This e-mail is the property of Houston Methodist
and/or its relevant
affiliates and may contain restricted and privileged material for the sole use
of the intended
recipient(s). Any review, use, distribution or disclosure by others is strictly
prohibited. If you
are not the intended recipient (or authorized to receive for the recipient),
please contact the
sender and delete all copies of the message. Thank you.
_______________________________________________
Freesurfer mailing list
Freesurfer@nmr.mgh.harvard.edu
https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
The information in this e-mail is intended only for the person to whom it is
addressed. If you believe this e-mail was sent to you in error and the e-mail
contains patient information, please contact the Partners Compliance HelpLine at
http://www.partners.org/complianceline . If the e-mail was sent to you in error
but does not contain patient information, please contact the sender and properly
dispose of the e-mail.
