Try setting the FS_LOAD_DWI env var to 0, eg, setenv FS_LOAD_DWI 0
or export FS_LOAD_DWI=0 On 01/23/2018 10:43 AM, Bruce Fischl wrote: > > > > we don't have much experience with it. Can you cc the FS list so that > others can answer? I'll do so on this email. Maybe try some other tool > for conversion? If recon-all fails it is not surprising that > mri_convert also fails since they use the same DICOM code > > cheers > Bruce > > On Tue, 23 Jan 2018, Julia Ströhlein wrote: > >> >> Hi Bruce, >> >> thank you very much for your reply. >> >> >> >> I’m sure that I use the right series. I tried to convert my DICOM >> files to >> nifti, but this produces >> the same error and the command also doesn`t create the NIFTI file. >> >> >> >> Julias-MacBook-Air:~ Jule$ cd >> /Applications/freesurfer/subjects/MRtest2/001/001/9 >> >> Julias-MacBook-Air:9 Jule$ mri_convert 00010001 00010001.nii >> >> mri_convert.bin 00010001 00010001.nii >> >> $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ >> >> reading from 00010001... >> >> Starting DICOMRead2() >> >> dcmfile = /Applications/freesurfer/subjects/MRtest2/001/001/9/00010001 >> >> dcmdir = /Applications/freesurfer/subjects/MRtest2/001/001/9 >> >> ERROR: don't know how to get DWI parameters from --Hitachi Medical >> Corporation -- >> >> ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 >> >> DICOM File: >> /Applications/freesurfer/subjects/MRtest2/001/001/9/00010001 >> >> break DICOMRead.c:5228 >> >> Ref Series No = 9 >> >> Found 302 files, checking for dicoms >> >> ERROR: don't know how to get DWI parameters from --Hitachi Medical >> Corporation – >> >> >> >> Do you know problems like this with this type of MR scanner? >> >> >> >> Kind regards, >> >> Julia >> >> >> >> Unbenannt >> >> >> >> >> > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
