we don't have much experience with it. Can you cc the FS list so that others can answer? I'll do so on this email. Maybe try some other tool for conversion? If recon-all fails it is not surprising that mri_convert also fails since they use the same DICOM code
cheers Bruce On Tue, 23 Jan 2018, Julia Ströhlein wrote:
Hi Bruce, thank you very much for your reply. I’m sure that I use the right series. I tried to convert my DICOM files to nifti, but this produces the same error and the command also doesn`t create the NIFTI file. Julias-MacBook-Air:~ Jule$ cd /Applications/freesurfer/subjects/MRtest2/001/001/9 Julias-MacBook-Air:9 Jule$ mri_convert 00010001 00010001.nii mri_convert.bin 00010001 00010001.nii $Id: mri_convert.c,v 1.226 2016/02/26 16:15:24 mreuter Exp $ reading from 00010001... Starting DICOMRead2() dcmfile = /Applications/freesurfer/subjects/MRtest2/001/001/9/00010001 dcmdir = /Applications/freesurfer/subjects/MRtest2/001/001/9 ERROR: don't know how to get DWI parameters from --Hitachi Medical Corporation -- ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /Applications/freesurfer/subjects/MRtest2/001/001/9/00010001 break DICOMRead.c:5228 Ref Series No = 9 Found 302 files, checking for dicoms ERROR: don't know how to get DWI parameters from --Hitachi Medical Corporation – Do you know problems like this with this type of MR scanner? Kind regards, Julia Unbenannt
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