Hi Julia, I’m sure one of the Freesurfer experts will reply soon. Perhaps this will be helpful though.
It looks like recon-all is failing to find you dicom images. You might want to post the recon-all command sequence you are using for them. The first thing to check is that you are providing the name of one of the dicom files to recon-all, e.g. recon-all -all -subject SubName -i full_pathname_of_one_of_the_dicom_files recon-all -all -subject 173 -i /home/kriegerd/MriData/SubName/T1-Sagittal_MPRAGE_Iso_256x256.2/MR.1.3.12.2.1107.5.2.32.35217.2015051115153419213726461 Best - Don From: freesurfer-boun...@nmr.mgh.harvard.edu [mailto:freesurfer-boun...@nmr.mgh.harvard.edu] On Behalf Of "Julia Ströhlein" Sent: Monday, January 22, 2018 9:30 AM To: freesurfer@nmr.mgh.harvard.edu Subject: [Freesurfer] recon-all error Dear FreeSurfer developers, I am new to FreeSurfer and this is the first time I am working with MR images. I’ve been trying to run recon-all for my first subject and I keep getting errors like: ERROR: GetDICOMInfo(): dcmGetDWIParams() 1 DICOM File: /Applications/freesurfer/subjects/MRtest2/001/001/9/00010001 break DICOMRead.c:5228 Ref Series No = 9 Found 302 files, checking for dicoms ERROR: don't know how to get DWI parameters from --Hitachi Medical Corporation -- The DICOM files are from an open 1,2 T MR Scanner from Hitachi Medical Systems. We used a T1 isoFSE sequence. FreeSurfer version: freesurfer-Darwin-OSX-stable-pub-v6.0.0-2beb96c Platform: macOS High Sierra version 10.13.2 You will find the recon-all.log file attached. Thank you very much, Julia
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