Bruce, Thank you for the response. Attempting to use this method has not produced results, and I am unsure how to proceed or if I had performed it improperly. I have attached an example of the control points being placed, if that helps any. Thank you,
Nicholas Goh On Wed, Sep 27, 2017 at 11:04 AM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > Hi Nicholas > > yes, possibly, depending on why you are missing chunks. If the white > matter in the regions you are missing has intensity values significantly < > 110 then what you are doing should help. The control.dat file must be place > in the subject/tmp dir for us to find it. > > cheers > Bruce > On Wed, 27 Sep 2017, Nicholas Goh wrote: > > I am attempting to fix the aparc+aseg.mgz file for an image, and wanted to >> check to see if I am >> doing it correctly.What I was doing which seemed to be ineffective was >> 1)create a new point set of control points labelled control.dat >> 2)place control points along what should be white matter >> 3)save point set >> 4)run recon-all -autorecon2-cp -autorecon3 -subjid XXXX >> >> Is this the correct way to go about fixing aparc+aseg files that are >> missing chunks of the brain? Is >> there a better way to go about this? >> Thanks for the help, >> >> Nicholas Goh >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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