Hi Nicholas
yes, possibly, depending on why you are missing chunks. If the white
matter in the regions you are missing has intensity values significantly
< 110 then what you are doing should help. The control.dat file must be
place in the subject/tmp dir for us to find it.
cheers
Bruce
On Wed, 27 Sep 2017,
Nicholas Goh wrote:
I am attempting to fix the aparc+aseg.mgz file for an image, and wanted to
check to see if I am
doing it correctly.What I was doing which seemed to be ineffective wasÂ
1)create a new point set of control points labelled control.dat
2)place control points along what should be white matter
3)save point set
4)run recon-all -autorecon2-cp -autorecon3 -subjid XXXX
Is this the correct way to go about fixing aparc+aseg files that are missing
chunks of the brain? Is
there a better way to go about this?
Thanks for the help,
Nicholas Goh
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