Dear Bruce, Thanks for you reply. I was just about to answer my own question in the same way :) This does seem to do what I want. Awesome! (see https://surfer.nmr.mgh.harvard.edu/fswiki/BrodmannAreaMaps)
I was just wondering how the threshold is chosen to define each ROI? Best, Michael On 15/05/17 15:43, Bruce Fischl wrote: > Hi Michael > > I believe you can just run the -balabels switch, which should only take a > couple of minutes > > cheers > Bruce > On Mon, 15 May 2017, Michael Bannert wrote: > >> Dear FreeSurfer community, >> >> I would like to perform a ROI analysis using an anatomical mask. I was >> thinking of using the thresholded masks in the annotations file created >> from running recon-all. >> >> Now I noticed that a few of my older datasets do not seem to have >> thresholded annotation files, but only the unthresholded ones. >> >> Is it possible to create these files (e.g., l/rh.BA.tresh.annot) again >> without having to run recon-all over again? Maybe from manually >> thresholding the unthresholded annotation files (l/rh.BA.annot)? >> >> How would I go about this? >> >> Thanks and best, >> Michael >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
