Hi Dr. Greve, I did not find --help option very helpful here and also I could not find much help from the previous FreeSurfer posts. Could you please share more details here e.g. how to set up fsgd and contrast file and how to run mri_glmfit command here (e.g. what inputs should be provided here?).
I am basically interested in correlating volume and gyrification regressing out the effect of age and gender. I already have lh.pial_lgi and lh.volume files saved in 'surf' directory of each subject. Thanks. On Thu, Apr 27, 2017 at 8:42 AM, Douglas N Greve <gr...@nmr.mgh.harvard.edu> wrote: > You have to use the --pvr option to mri_glmfit. Run it with --help to > get more info and write back if you still have questions > > > On 04/26/2017 08:33 PM, Martin Juneja wrote: > > Hello FreeSurfer experts, > > > > I came across a paper: > > http://www.sciencedirect.com/science/article/pii/S0166432815001837 > > where correlation maps between volume and gyrification are reported. > > > > I am familiar with GLM in FreeSurfer i.e. correlating behavioral > > measures with volume and gyrification but I was wondering how to > > correlate structure measures with each other e.g. volume and > gyrification. > > > > I would really appreciate any help. > > > > Thanks. > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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