Hi everyone, when I used following command:
mri_binarize --i myfile.img --match 17 --binval -1 --o your.lefthippo.nii.gz then I got output your.lefthippo.nii.gz file when I read this file using FREEVIEW then it completly different from original mask. Thanks Dilip​ On Thu, Apr 6, 2017 at 11:08 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > Hi Dilip > > yes, freesurfer will do this for you, although the labels will be 17 for > left hippocampus and 53 for right. > > cheers > Bruce > On Thu, 6 Apr 2017, Dilip Puri wrote: > > > Hi everyone, > > > > I am working on Hippocampus segmentation using Neural Networks for that > I need labeled images of Hippocampus corresponding to original images. > > > > I am using OASIS Dataset for this. I want to generate labeled images > using FREESURFER. Is there any way to label each 3D co-ordinate > > HippoCampus -1 > > Otherwise - 0 > > > > Here are sample files link > > > > Kindly help me! > > > > > > Dilip Puri > > IIIT Vadodara > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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