if you use the version 6 of mri_glmfit, it will automatically output the pcc.mgh file. If you want a cohen's D, then you can
cd glmdir/contrast fscalc gamma.mgh div ../rstd.mgh -o cohensd.mgh On 03/13/2017 01:45 PM, Juan Baldermann wrote: > Dear all, > > I did a correlation analysis in qdec and now I want to report effect > sizes of my significant clustes. How can I extract a correlation > coefficient for this type of analyis? Or any other effect size? I saw > that i can derive them from the pcc.mgh file, but this somehow didn't > work in matlab...does the gamma.mgh file also have effect sizes per > cluster? > > Kind regards > Carlos > > > ------------------------------------------------------------------------ > Dr. med. Juan Carlos Baldermann > Wissenschaftlicher Mitarbeiter, Assistenzarzt > AG Neurobiologie und Neuromodulation psychischer Erkrankungen > Klinik für Psychiatrie und Psychotherapie > Universitätsklinikum Köln > Kerpener Str. 62 > D - 50937 Köln > Telefon: 0221- 478 86211 > Email: juan.balderm...@uk-koeln.de > __________________________________________________________________________________________________________ > > _VERTRAULICHKEITSHINWEIS: Diese E-Mail und alle anhängenden Dokumente > enthalten Informationen, die ausschließlich für die adressierte Person > bestimmt sind. Die Informationen können gemäß den einschlägigen > Vorschriften vertraulich und/oder von Veröffentlichungen ausgenommen > sein. Das Kopieren und die Weitergabe an nicht autorisierte Dritte > sind verboten. Falls Sie nicht der Empfänger sind, benachrichtigen Sie > uns bitte umgehend. Danke! CONFIDENTIALITY NOTICE : This email and any > documents which may accompany it, contains information, which is > intended solely for the use of the individual or entity to which it is > addressed, and which may contain information that is privileged, > confidential, and/or otherwise exempt from disclosure under applicable > law. If the reader of this message is not the intended recipient, any > disclosure, dissemination, distribution, copying orother use of this > communication or its substance are prohibited. If you have received > this communication in error, please contact us immediately. Thank you! > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
