Hi! recon-all -all -3T -s /sub008 -hippocampal-subfields-T1T2 /sub008/sub_008_T2.nii.gz T2Flair looks good. The flag -hippocampal-subfields-T1FLAIR does not even exist ;-) Cheers, /Eugenio
Juan Eugenio Iglesias ERC Senior Research Fellow Translational Imaging Group University College London http://www.jeiglesias.com http://cmictig.cs.ucl.ac.uk/ On 3 Feb 2017, at 11:32, Erik O'Hanlon <erikohan...@rcsi.ie<mailto:erikohan...@rcsi.ie>> wrote: recon-all -all -3T -s /sub008 -hippocampal-subfields-T1T2 /sub008/sub_008_T2.nii.gz T2Flair
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