Thanks for the quick reply. I'll re-run my subjects with the -FLAIR flag.
Joe ________________________________ From: freesurfer-boun...@nmr.mgh.harvard.edu <freesurfer-boun...@nmr.mgh.harvard.edu> on behalf of Bruce Fischl <fis...@nmr.mgh.harvard.edu> Sent: 02 February 2017 22:56 To: Freesurfer support list Subject: Re: [Freesurfer] Simple question regarding -T2 and -FLAIR flags (freesurfer v6) Hi Joe there are slight differences, and for sure we reserve the right to use the knowledge that it is a FLAIR scan in the algorithms, so you should probably rerun cheers Bruce On Thu, 2 Feb 2017, Joe Necus (PGR) wrote: > > Hello, > > > I am running recon-all on the latest version of freesurfer (Version 6) and > would like to know whether > there is any difference between using the -T2 -T2Pial and -Flair flags. > > > I am currently running recon-all with a T1 and FLAIR image, but have used the > -T2 -T2pial flags and > would like to know whether I need to go back and instead re-run with the > -FLAIR flag instead. > > > Thanks a lot, > > Joe > > > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer Freesurfer Info Page - Harvard University<https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> mail.nmr.mgh.harvard.edu To see the collection of prior postings to the list, visit the Freesurfer Archives. A searchable archive which of messages PRIOR to March 2004 is at ... The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error mycompliancereport.com<http://www.partners.org/complianceline> www.partners.org ComplianceLine engages in the business of providing 24-hour toll-free hotlines for the reporting and tracking of compliance concerns to assist in the identification of possible unethical, illegal or questionable behavior. but does not contain patient information, please contact the sender and properly dispose of the e-mail.
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