Hi Joe there are slight differences, and for sure we reserve the right to use the knowledge that it is a FLAIR scan in the algorithms, so you should probably rerun
cheers Bruce On Thu, 2 Feb 2017, Joe Necus (PGR) wrote: > > Hello, > > > I am running recon-all on the latest version of freesurfer (Version 6) and > would like to know whether > there is any difference between using the -T2 -T2Pial and -Flair flags. > > > I am currently running recon-all with a T1 and FLAIR image, but have used the > -T2 -T2pial flags and > would like to know whether I need to go back and instead re-run with the > -FLAIR flag instead. > > > Thanks a lot, > > Joe > > > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
