Thanks bruce. Any comments from other will also be helpful. Also, other wm.*.mgz that were generated besides wm.seg.mgz include: wm.asegedit.mgz, wm.mgz, and wm.parc.mgz. Best, Paul
On Mon, Dec 5, 2016 at 2:22 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > Hi Paul > > you should run autorecon2-wm -autorecon3 so you don't have to rerun the > whole aseg stuff. I think that thiw will work as we will see that > wm.seg.mgz is different than wm.auto.mgz, but perhaps one of our recon-all > experts can commment as I've lost track of the various wm*.mgz files we now > generate > > cheers > Bruce > > > > On Mon, 5 Dec 2016, miracle ozzoude wrote: > > >> ---------- Forwarded message ---------- >> From: <miracoo...@gmail.com> >> Date: Fri, Dec 2, 2016 at 5:42 PM >> Subject: Edit to wm.seg.mgz. >> To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu> >> >> >> Hello Freesurfer, >> I replaced wm.seg.mgz from freesurfer with white matter +lesion (called >> it wm.seg.mgz before replacing) from lesion explorer. Do I run recon-all >> -autorecon2-wm >> -autorecon3 -s fsdir ( I know -autorecon2 -wm is used when you make edits >> to wm.mgz) or should I just run recon-all -autorecon2 -autorecon3-s fsdir? >> Also, how do I >> know this change I made was incorporated in FS? Thank you. >> Best, >> Paul >> >> Sent from my BlackBerry 10 smartphone. >> >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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