| Hello Freesurfer, I replaced wm.seg.mgz from freesurfer with white matter +lesion (called it wm.seg.mgz before replacing) from lesion explorer. Do I run recon-all -autorecon2-wm -autorecon3 -s fsdir ( I know -autorecon2 -wm is used when you make edits to wm.mgz) or should I just run recon-all -autorecon2 -autorecon3-s fsdir? Also, how do I know this change I made was incorporated in FS? Thank you. Best, Paul Sent from my BlackBerry 10 smartphone.
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