Hi Paul
you should run autorecon2-wm -autorecon3 so you don't have to rerun the
whole aseg stuff. I think that thiw will work as we will see that
wm.seg.mgz is different than wm.auto.mgz, but perhaps one of our recon-all
experts can commment as I've lost track of the various wm*.mgz files we now
generate
cheers
Bruce
On Mon, 5 Dec 2016, miracle ozzoude wrote:
---------- Forwarded message ----------
From: <miracoo...@gmail.com>
Date: Fri, Dec 2, 2016 at 5:42 PM
Subject: Edit to wm.seg.mgz.
To: Freesurfer support list <freesurfer@nmr.mgh.harvard.edu>
Hello Freesurfer,
I replaced wm.seg.mgz from freesurfer with white matter +lesion (called it
wm.seg.mgz before replacing) from lesion explorer. Do I run recon-all
-autorecon2-wm
-autorecon3 -s fsdir ( I know -autorecon2 -wm is used when you make edits to
wm.mgz) or should I just run recon-all -autorecon2 -autorecon3-s fsdir? Also,
how do I
know this change I made was incorporated in FS? Thank you.
Best,
Paul
Sent from my BlackBerry 10 smartphone.
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