Run mri_glmfit-sim using the Qdec output folder as the --glmdir and setting the thresholds and signs as you had them in qdec. The output will then be in a file called something like cache.th20.pos.y.ocn.dat. the cluster summary table will be in cache.th20.pos.sig.cluster.summary
On 11/07/2016 12:33 PM, Mihaela Stefan wrote: > Hello Freesurfers, > > I am doing a group analysis using Qdec. I have a few significant > clusters and I would like to plot one of them. Qdec does that if I > click on 'Find Clusters and Goto Max' but I don't see options for the > design of the plot. > How can I export the thickness values from my cluster to reproduce the > Qdec plot in another program? > > Thank you! > Mihaela > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer -- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
