I'm sorry, I might not have used the right word. Let's say 'blob' instead
of cluster. It's something like the plot attached. Each circle/square is a
subject. I would like to export that so I can make the plot myself.
Best,
Mihaela

On Mon, Nov 7, 2016 at 4:38 PM, Douglas N Greve <gr...@nmr.mgh.harvard.edu>
wrote:

> What do you mean a "plot"? I had assumed you wanted to average over
> clusters, but FDR does not produce clusters
>
>
> On 11/07/2016 04:26 PM, Mihaela Stefan wrote:
> > That seems to be for Monte Carlo simulation. What if I use FDR or if I
> > want to look at a plot from an uncorrected map?
> >
> > Thanks!
> > Mihaela
> >
> > On Mon, Nov 7, 2016 at 3:16 PM, Douglas N Greve
> > <gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> wrote:
> >
> >     Run mri_glmfit-sim using the Qdec output folder as the --glmdir and
> >     setting the thresholds and signs as you had them in qdec. The output
> >     will then be in a file called something like
> cache.th20.pos.y.ocn.dat.
> >     the cluster summary table will be in
> >     cache.th20.pos.sig.cluster.summary
> >
> >
> >     On 11/07/2016 12:33 PM, Mihaela Stefan wrote:
> >     > Hello Freesurfers,
> >     >
> >     > I am doing a group analysis using Qdec. I have a few significant
> >     > clusters and I would like to plot one of them. Qdec does that if I
> >     > click on 'Find Clusters and Goto Max' but I don't see options
> >     for the
> >     > design of the plot.
> >     > How can I export the thickness values from my cluster to
> >     reproduce the
> >     > Qdec plot in another program?
> >     >
> >     > Thank you!
> >     > Mihaela
> >     >
> >     >
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> >     --
> >     Douglas N. Greve, Ph.D.
> >     MGH-NMR Center
> >     gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>
> >     Phone Number: 617-724-2358 <tel:617-724-2358>
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> >
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> >     Outgoing:
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> >
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> --
> Douglas N. Greve, Ph.D.
> MGH-NMR Center
> gr...@nmr.mgh.harvard.edu
> Phone Number: 617-724-2358
> Fax: 617-726-7422
>
> Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting
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