I'm sorry, I might not have used the right word. Let's say 'blob' instead of cluster. It's something like the plot attached. Each circle/square is a subject. I would like to export that so I can make the plot myself. Best, Mihaela
On Mon, Nov 7, 2016 at 4:38 PM, Douglas N Greve <gr...@nmr.mgh.harvard.edu> wrote: > What do you mean a "plot"? I had assumed you wanted to average over > clusters, but FDR does not produce clusters > > > On 11/07/2016 04:26 PM, Mihaela Stefan wrote: > > That seems to be for Monte Carlo simulation. What if I use FDR or if I > > want to look at a plot from an uncorrected map? > > > > Thanks! > > Mihaela > > > > On Mon, Nov 7, 2016 at 3:16 PM, Douglas N Greve > > <gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu>> wrote: > > > > Run mri_glmfit-sim using the Qdec output folder as the --glmdir and > > setting the thresholds and signs as you had them in qdec. The output > > will then be in a file called something like > cache.th20.pos.y.ocn.dat. > > the cluster summary table will be in > > cache.th20.pos.sig.cluster.summary > > > > > > On 11/07/2016 12:33 PM, Mihaela Stefan wrote: > > > Hello Freesurfers, > > > > > > I am doing a group analysis using Qdec. I have a few significant > > > clusters and I would like to plot one of them. Qdec does that if I > > > click on 'Find Clusters and Goto Max' but I don't see options > > for the > > > design of the plot. > > > How can I export the thickness values from my cluster to > > reproduce the > > > Qdec plot in another program? > > > > > > Thank you! > > > Mihaela > > > > > > > > > _______________________________________________ > > > Freesurfer mailing list > > > Freesurfer@nmr.mgh.harvard.edu > > <mailto:Freesurfer@nmr.mgh.harvard.edu> > > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> > > > > -- > > Douglas N. Greve, Ph.D. > > MGH-NMR Center > > gr...@nmr.mgh.harvard.edu <mailto:gr...@nmr.mgh.harvard.edu> > > Phone Number: 617-724-2358 <tel:617-724-2358> > > Fax: 617-726-7422 <tel:617-726-7422> > > > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > > <http://surfer.nmr.mgh.harvard.edu/fswiki/BugReporting> > > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > > <https://gate.nmr.mgh.harvard.edu/filedrop2> > > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > > <http://www.nmr.mgh.harvard.edu/facility/filedrop/index.html> > > Outgoing: > > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > <ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/> > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu <mailto:freesur...@nmr.mgh. > harvard.edu> > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > <https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer> > > > > > > The information in this e-mail is intended only for the person to > > whom it is > > addressed. If you believe this e-mail was sent to you in error and > > the e-mail > > contains patient information, please contact the Partners > > Compliance HelpLine at > > http://www.partners.org/complianceline > > <http://www.partners.org/complianceline> . If the e-mail was sent > > to you in error > > but does not contain patient information, please contact the > > sender and properly > > dispose of the e-mail. > > > > > > > > > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > -- > Douglas N. Greve, Ph.D. > MGH-NMR Center > gr...@nmr.mgh.harvard.edu > Phone Number: 617-724-2358 > Fax: 617-726-7422 > > Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting > FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 > www.nmr.mgh.harvard.edu/facility/filedrop/index.html > Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >
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