Hi Joel can you include the entire thread when responding? Usually overlay is a suboption in freeview. So it would probably be something like:
freeview -f lh.inflated:overlay=lh.overlay.mgz cheers Bruce On Tue, 4 Oct 2016, Joel Bruss wrote: > .mgz format made no difference. I see no option for "overlay" in > freeview., I only get that option with tksurfer. The image is blank > when loaded as a volume in freeview. It loads forever when I try to > load it as a surface (I just get the 0-100% progress bar conintually > loading with no end). If I try to load the rh.pial as a surface, then > load the file as a volume overlay, it crashes freeview. > > > A few days back, Anna Crawford had a thread entitled "Volume to Surface" > where she provided a pic of the inflated surface and the output of > wmparc on the surface. If I try to run the exact same commands she did, > I can't get any pics in freeview and it just crashes on me. FWIW, I'm > running freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0. > > > On 10/03/2016 04:08 PM, Trisanna Sprung-Much wrote: >> I think it might have to do with the format of your output file - >> perhaps try .mgz? This is what I used. >> >> Then open the surface and use the "overlay" option to overlay your ROI >> as a surface overlay. > > > > ________________________________ > Notice: This UI Health Care e-mail (including attachments) is covered by the > Electronic Communications Privacy Act, 18 U.S.C. 2510-2521 and is intended > only for the use of the individual or entity to which it is addressed, and > may contain information that is privileged, confidential, and exempt from > disclosure under applicable law. If you are not the intended recipient, any > dissemination, distribution or copying of this communication is strictly > prohibited. If you have received this communication in error, please notify > the sender immediately and delete or destroy all copies of the original > message and attachments thereto. Email sent to or from UI Health Care may be > retained as required by law or regulation. Thank you. > ________________________________ > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
