Dear all, I have created a Docker image with Freesurfer distribution (and all required dependencies).
Features: - Only requires Docker to run (works on Linux, Mac and Windows - does not suffer from the VirtualBox bug <https://www.mail-archive.com/freesurfer@nmr.mgh.harvard.edu/msg42474.html> ) - understands BIDS <http://bids.neuroimaging.io/> formatted datasets - performs recon-all on all subjects - allows you to run each subject independently (and potentially in parallel) - automatically performs longitudinal analysis when multiple sessions are detected - creates custom group level template for your study - can be easily converted to a Singularity <http://singularity.lbl.gov/> image using docker2singularity <https://github.com/chrisfilo/docker2singularity> tool and run on your local HPC/cluster You can find more information here: https://github.com/BIDS-Apps/freesurfer Please let me know what do you think! Best, Chris
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
