Hi FS Experts,
I'm trying to use the mni152reg command but I get an error that --lta is not
recognized.
It appears that fslregister doesn't have this option. There was a previous post
about this
problemhttp://www.mail-archive.com/freesurfer%40nmr.mgh.harvard.edu/msg41953.html
but I can't figure out if the problem had been solved. The version of mni152reg
I am using is$Id: mni152reg,v 1.9 2014/07/07 18:59:08 greve Exp $ on Mac OS
10.8.
Thanks,Leila
On Wednesday, June 15, 2016 11:55 AM, Leila Reddy <le...@yahoo.com> wrote:
Hi,
I have a binary mask from the WFU_Pickatlas. I think this mask in in the MNI152
space (when I load_nifti in Matlab I get dimensions of [91 109 91]. I would
like to convert this mask into the native space of each subject. I tried the
following command but the results do not look right in Freeview:
mri_vol2vol --mov mask_MNI152.nii --targ bold/005/f.nii.gz --o
mask_in_Native.nii --mni152reg
The overlay of the mask on f.nii in Freeview is mostly outside the brain.
How can I go about this step?
Thanks for your help,Leila
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