Try now On 06/15/2016 06:30 PM, Leila Reddy wrote: > Hi Doug, > > Thanks for your reply. > > When I run mni152reg I get an error : ERROR: Flag --lta unrecognized > > I'm using v 1.9 of this file. > > I found a post that said to download a newer version from here: > ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/mni152reg > > but it doesn't seem to be there anymore. > > Thanks, > Leila > > On Wednesday, June 15, 2016 11:55 AM, Leila Reddy <le...@yahoo.com> wrote: > > > Hi, > > I have a binary mask from the WFU_Pickatlas. I think this mask in in > the MNI152 space (when I load_nifti in Matlab I get dimensions of [91 > 109 91]. I would like to convert this mask into the native space of > each subject. I tried the following command but the results do not > look right in Freeview: > > mri_vol2vol --mov mask_MNI152.nii --targ bold/005/f.nii.gz --o > mask_in_Native.nii --mni152reg > > The overlay of the mask on f.nii in Freeview is mostly outside the brain. > > How can I go about this step? > > Thanks for your help, > Leila > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
-- Douglas N. Greve, Ph.D. MGH-NMR Center gr...@nmr.mgh.harvard.edu Phone Number: 617-724-2358 Fax: 617-726-7422 Bugs: surfer.nmr.mgh.harvard.edu/fswiki/BugReporting FileDrop: https://gate.nmr.mgh.harvard.edu/filedrop2 www.nmr.mgh.harvard.edu/facility/filedrop/index.html Outgoing: ftp://surfer.nmr.mgh.harvard.edu/transfer/outgoing/flat/greve/ _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
