ok thanks Dr. Fischl. I will use tksurfer in the meantime. best wishes
Trisanna -- Ph.D. Candidate McGill University Integrated Program in Neuroscience Psychology On Wed, Apr 27, 2016 at 8:27 AM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > yes, I think that's true, although editing labels on the surface is on our > to-do list I believe > On Tue, 26 Apr 2016, Trisanna Sprung-Much wrote: > > thanks Dr. Fischl - it seems to match well so I will continue to use this >> method. It would be great if Ruopeng could eventually edit Freesurfer to >> allow for thresholding .labels too. >> >> On another note, is there a way to edit labels in Freeview in a similar >> manner to doing so in tksurfer? From what I can tell, one can only edit >> volume segmentations in Freeview. >> >> best >> >> Trisanna >> >> >> >> -- >> Ph.D. CandidateMcGill University >> Integrated Program in Neuroscience >> Psychology >> >> >> On Mon, Apr 25, 2016 at 8:43 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu >> > >> wrote: >> yes, that sounds right. Does it look correct? That is, are areas >> 1/4 etc.. in the central sulcus and such? >> On Mon, 25 Apr 2016, Trisanna Sprung-Much wrote: >> >> Not a problem, Dr. Fischl! >> In the meantime, could you please confirm that I am >> opening up a cytoarchitectonic probability map I >> have as .mnc >> correctly? >> >> I basically change it to a surface overlay.mgz using >> mri_vol2surf and then open it as an overlay with a >> surface in >> Freeview. I can then change the thresholds using >> "configure overlay". >> >> best >> >> Trisanna >> >> -- >> Ph.D. CandidateMcGill University >> Integrated Program in Neuroscience >> Psychology >> >> >> On Mon, Apr 25, 2016 at 6:53 PM, Bruce Fischl >> <fis...@nmr.mgh.harvard.edu> wrote: >> Hi Trisanna >> >> yes, but Ruopeng is on vacation to it will be >> a while >> >> Bruce >> On Mon, 25 Apr 2016, Trisanna Sprung-Much >> wrote: >> >> Hi there >> >> With regards to this email from March, I >> cannot seem to be able to change >> thresholds of .labels in Freeview. Could >> this be added as an option? >> >> best wishes >> >> Trisanna >> >> -- >> Ph.D. CandidateMcGill University >> Integrated Program in Neuroscience >> Psychology >> >> >> On Sun, Mar 13, 2016 at 1:45 PM, Bruce >> Fischl <fis...@nmr.mgh.harvard.edu> >> wrote: >> Hi Trisanna >> >> 1. the .thresh labels have been >> thresholded with a p-value >> threshold that is "best" on our >> training set of >> manually/architectonically defined >> labels. >> >> 2. Hmmm, not sure, but we have >> stopped development on tksurfer. >> Can you try this on freeview? I >> can't remember if freeview >> allows changing thresholds in >> labels, but if not Ruopeng can add >> it to his list of feature requests >> >> cheers >> Bruce >> >> >> >> On Sat, 12 Mar 2016, Trisanna >> Sprung-Much wrote: >> >> Hi there >> I have two questions >> regarding using the labels with >> tksurfer: >> >> 1. What exactly has been >> done to change the .label >> (e.g. lh BA44.label) to >> .thresh.label (e.g. lh >> BA44.thresh.label? >> >> 2. The instructions on this >> page >> >> >> https://surfer.nmr.mgh.harvard.edu/fswiki/BrodmannAreaMaps >> >> to overlay the labels and >> set the Min and Max do not >> seem to work for me - I >> cannot seem to alter the Min >> from 2 and the Max from >> 5. Any thoughts as to >> why? >> >> thanks very much! >> >> Trisanna >> >> >> -- >> Ph.D. CandidateMcGill >> University >> Integrated Program in >> Neuroscience >> Psychology >> >> >> >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is >> intended only for the person >> to whom it is >> addressed. 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If the e-mail was sent to you >> in error >> but does not contain patient information, please contact the sender >> and properly >> dispose of the e-mail. >> >> >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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