Not a problem, Dr. Fischl! In the meantime, could you please confirm that I am opening up a cytoarchitectonic probability map I have as .mnc correctly?
I basically change it to a surface overlay.mgz using mri_vol2surf and then open it as an overlay with a surface in Freeview. I can then change the thresholds using "configure overlay". best Trisanna -- Ph.D. Candidate McGill University Integrated Program in Neuroscience Psychology On Mon, Apr 25, 2016 at 6:53 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu> wrote: > Hi Trisanna > > yes, but Ruopeng is on vacation to it will be a while > > Bruce > On Mon, 25 Apr 2016, Trisanna Sprung-Much wrote: > > Hi there >> >> With regards to this email from March, I cannot seem to be able to change >> thresholds of .labels in Freeview. Could this be added as an option? >> >> best wishes >> >> Trisanna >> >> -- >> Ph.D. CandidateMcGill University >> Integrated Program in Neuroscience >> Psychology >> >> >> On Sun, Mar 13, 2016 at 1:45 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu >> > >> wrote: >> Hi Trisanna >> >> 1. the .thresh labels have been thresholded with a p-value >> threshold that is "best" on our training set of >> manually/architectonically defined labels. >> >> 2. Hmmm, not sure, but we have stopped development on tksurfer. >> Can you try this on freeview? I can't remember if freeview >> allows changing thresholds in labels, but if not Ruopeng can add >> it to his list of feature requests >> >> cheers >> Bruce >> >> >> >> On Sat, 12 Mar 2016, Trisanna Sprung-Much wrote: >> >> Hi there >> I have two questions regarding using the labels with >> tksurfer: >> >> 1. What exactly has been done to change the .label >> (e.g. lh BA44.label) to >> .thresh.label (e.g. lh BA44.thresh.label? >> >> 2. The instructions on this page >> >> https://surfer.nmr.mgh.harvard.edu/fswiki/BrodmannAreaMaps >> >> to overlay the labels and set the Min and Max do not >> seem to work for me - I >> cannot seem to alter the Min from 2 and the Max from >> 5. Any thoughts as to >> why? >> >> thanks very much! >> >> Trisanna >> >> >> -- >> Ph.D. CandidateMcGill University >> Integrated Program in Neuroscience >> Psychology >> >> >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person >> to whom it is >> addressed. If you believe this e-mail was sent to you in error >> and the e-mail >> contains patient information, please contact the Partners >> Compliance HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent >> to you in error >> but does not contain patient information, please contact the >> sender and properly >> dispose of the e-mail. >> >> >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
