yes, I think that's true, although editing labels on the surface is on
our to-do list I believe
On Tue, 26 Apr 2016, Trisanna Sprung-Much wrote:
thanks Dr. Fischl - it seems to match well so I will continue to use this
method. It would be great if Ruopeng could eventually edit Freesurfer to
allow for thresholding .labels too.
On another note, is there a way to edit labels in Freeview in a similar
manner to doing so in tksurfer? From what I can tell, one can only edit
volume segmentations in Freeview.
best
Trisanna
--
Ph.D. CandidateMcGill University
Integrated Program in Neuroscience
Psychology
On Mon, Apr 25, 2016 at 8:43 PM, Bruce Fischl <fis...@nmr.mgh.harvard.edu>
wrote:
yes, that sounds right. Does it look correct? That is, are areas
1/4 etc.. in the central sulcus and such?
On Mon, 25 Apr 2016, Trisanna Sprung-Much wrote:
Not a problem, Dr. Fischl!
In the meantime, could you please confirm that I am
opening up a cytoarchitectonic probability map I
have as .mnc
correctly?
I basically change it to a surface overlay.mgz using
mri_vol2surf and then open it as an overlay with a
surface in
Freeview. I can then change the thresholds using
"configure overlay".
best
Trisanna
--
Ph.D. CandidateMcGill University
Integrated Program in Neuroscience
Psychology
On Mon, Apr 25, 2016 at 6:53 PM, Bruce Fischl
<fis...@nmr.mgh.harvard.edu> wrote:
Hi Trisanna
yes, but Ruopeng is on vacation to it will be
a while
Bruce
On Mon, 25 Apr 2016, Trisanna Sprung-Much
wrote:
Hi there
With regards to this email from March, I
cannot seem to be able to change
thresholds of .labels in Freeview. Could
this be added as an option?
best wishes
Trisanna
--
Ph.D. CandidateMcGill University
Integrated Program in Neuroscience
Psychology
On Sun, Mar 13, 2016 at 1:45 PM, Bruce
Fischl <fis...@nmr.mgh.harvard.edu>
wrote:
Hi Trisanna
1. the .thresh labels have been
thresholded with a p-value
threshold that is "best" on our
training set of
manually/architectonically defined
labels.
2. Hmmm, not sure, but we have
stopped development on tksurfer.
Can you try this on freeview? I
can't remember if freeview
allows changing thresholds in
labels, but if not Ruopeng can add
it to his list of feature requests
cheers
Bruce
On Sat, 12 Mar 2016, Trisanna
Sprung-Much wrote:
Hi there
I have two questions
regarding using the labels with
tksurfer:
1. What exactly has been
done to change the .label
(e.g. lh BA44.label) to
.thresh.label (e.g. lh
BA44.thresh.label?
2. The instructions on this
page
https://surfer.nmr.mgh.harvard.edu/fswiki/BrodmannAreaMaps
to overlay the labels and
set the Min and Max do not
seem to work for me - I
cannot seem to alter the Min
from 2 and the Max from
5. Any thoughts as to
why?
thanks very much!
Trisanna
--
Ph.D. CandidateMcGill
University
Integrated Program in
Neuroscience
Psychology
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