Hi Bruce, Indeed norm.mgz isn't empty but doesn't look well (truncated and warped).
Is this bug fixed in the v6 beta release ? If this is the case : 1) Would you advise me to try on the v6 ? 2) Should I so relaunch all recon-all process on my subjects computed with v5.3 and work only with the v6 beta ? Best regards, Matthieu 2015-12-09 15:55 GMT+01:00 Bruce Fischl <fis...@nmr.mgh.harvard.edu>: > Hi Matthieu > > this might be a bug that is fixed in 6.0. Can you cehck the input to > mri_cc (norm.mgz) and make sure it is not empty? In older versions if the > skull stripping failed and generated an empty > norm.mgz/aseg.auto_noCCseg.mgz the mri_cc code would hang. > > cheers > Bruce > > On Wed, 9 Dec 2015, > Matthieu Vanhoutte wrote: > > > Dear FS epxerts, > > > > I have launched a recon-all process on a subject. Unfortunately, I tried > two times but the process get stucked at the same step > > without error. > > > > Please found the recon-all.log associated attached to this mail. > > > > Thanks in advance for helping ! > > > > Best regards, > > Matthieu > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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