Yes, the ventricle is very small.
The segmentation in aparc and aseg is nice.How can I do to analyze this
subject? I need to include it in the analysis.Many thanks,
Stefano
----Messaggio originale----
Da: gr...@nmr.mgh.harvard.edu
Data: 30-ott-2015 16.03
A: <freesurfer@nmr.mgh.harvard.edu>
Ogg: Re: [Freesurfer] error vcsf.config
That means it could not find any CSF voxels. Try checking the
registration. It could also be that this is a subject with really
small ventricles.
On 10/30/15 3:57 AM, std...@virgilio.it
wrote:
Hi list,
During fcseed-sess -s subj -cfg vcsf.config
a subject produces the follow error.
I have rerun recon-all, cheched aparc+aseg
with tkmedit. They seem to be ok.
Why this error is produced?
Thanks
Stefano
Creating output directory
/Applications/freesurfer/subjects/fMRI/subj/rest/001/tmp.fcseed-sess.39124/glm
Loading y from
/Applications/freesurfer/subjects/fMRI/subj/rest/001/fmcpr.nii.gz
Saving design matrix to
/Applications/freesurfer/subjects/fMRI/subj/rest/001/tmp.fcseed-sess.39124/glm/Xg.dat
Normalized matrix condition is 61.5872
Matrix condition is 1e+08
Pruning voxels by thr: 0.000000
Found 0 voxels in mask
Saving mask to
/Applications/freesurfer/subjects/fMRI/subj/rest/001/tmp.fcseed-sess.39124/glm/mask.mgh
search space = 0.000000
DOF = 297
Starting fit and test
Fit completed in 0.0008 minutes
Computing temporal AR1
Writing results
Computing FSNR
mean
maxvox sig=0 F=0 at index 0 0 0
seed=1446518089
linear
maxvox sig=0 F=0 at index 0 0 0
seed=1446518089
quad
maxvox sig=0 F=0 at index 0 0 0
seed=1446518089
Computing PCA (300)
ERROR: no voxels in mask
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