Dear colleagues, I'm installing Freesurfer-Linux-CentOS4-stable-pub-v5.3.0 on Ubuntu 14.04 LTS (updated) and I managed to make tkmedit run correctly, but when I try QDEC and Freeview I'm getting this message: "qdec.bin: error while loading shared libraries: libjpeg.so.62: cannot open shared object file: No such fie or directory and "freeview.bin: error while loading shared libraries: libjpeg.so.62: cannot open shared object file: No such file or directory"
Any ideas or suggestions of what I might have done wrong? Thank you very much Best, Felipe Picon 2015-04-06 19:04 GMT-03:00 Johannes Kaufhold <johannes.kaufh...@outlook.com> : > Hi Zeke, > > I managed to solve this issue. > > I have changed the ownership of all folders and files in > /usr/local/freesurfer to my Ubuntu user name and now Freeview is working > with the sample data. > > ..Just seeing your email coming in. > > Best, > jk > > On 06/04/15 22:34, Johannes Kaufhold wrote: > > Hi Zeke, > > > > Yes, I'm attempting to open freeview in the same terminal window in > > which I have sourced SetUpFreeSurfer.csh. > > > > Here's the output from ls -l > > $FREESURFER_HOME/lib/vtk/lib/vtk-5.6/*libvtkverdict* > > > > lrwxrwxrwx 1 root root 22 May 13 2013 > > /usr/local/freesurfer/lib/vtk/lib/vtk-5.6/libvtkverdict.so -> > > libvtkverdict.so.5.6.0 > > lrwxrwxrwx 1 root root 22 May 13 2013 > > /usr/local/freesurfer/lib/vtk/lib/vtk-5.6/libvtkverdict.so.5.6 -> > > libvtkverdict.so.5.6.0 > > -rwsrwsr-t 1 root root 189017 Aug 17 2010 > > /usr/local/freesurfer/lib/vtk/lib/vtk-5.6/libvtkverdict.so.5.6.0 > > > > Best, > > Johannes > > > > On 06/04/15 21:48, Z K wrote: > >> Hello Johannes, > >> > >> You are attempting to open freeview *in the same window* that you > >> sourced SetUpFreeSurfer.csh(sh), correct? Also, can you tell me what the > >> output of the terminal is when you type the following command: > >> > >> ls -l $FREESURFER_HOME/lib/vtk/lib/vtk-5.6/*libvtkverdict* > >> > >> -Zeke > >> > >> On 04/06/2015 04:32 PM, Johannes Kaufhold wrote: > >>> Hi all, > >>> > >>> I'm super new to Freesurfer. I just set it up on my computer earlier > >>> today, following the official wiki on harvard.edu/fswiki... > >>> > >>> My system: > >>> - Ubuntu 14.04 LTS (up to date) > >>> - Tcsh installed > >>> - Freesurfer version: > >>> freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0.tar.gz > >>> < > ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/5.3.0/freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0.tar.gz > > > >>> - Mathlab not installed > >>> > >>> Sourcing the SetUpFreeSurfer.csh(sh) script worked fine and license.txt > >>> is in $FREESURFER_HOME. > >>> > >>> When trying to pull and view the sample data by entering the below in > >>> the terminal (tcsh) > >>> > >>> freeview -v $SUBJECTS_DIR/bert/mri/brainmask.mgz -v > >>> $SUBJECTS_DIR/bert/mri/aseg.mgz:colormap=lut:opacity=0.2 -f > >>> $SUBJECTS_DIR/bert/surf/lh.white:edgecolor=yellow -f > >>> $SUBJECTS_DIR/bert/surf/rh.white:edgecolor=yellow -f > >>> $SUBJECTS_DIR/bert/surf/lh.pial:annot=aparc:edgecolor=red -f > >>> $SUBJECTS_DIR/bert/surf/rh.pial:annot=aparc:edgecolor=red > >>> > >>> I'm getting the following error message* > >>> ** > >>> **freeview.bin: error while loading shared libraries: > >>> libvtkverdict.so.5.6: cannot open shared object file: No such file or > >>> directory* > >>> > >>> I was searching for the missing file in Aptitude and on the internet, > >>> but couldn't manage to find it. > >>> > >>> Any suggestions how to proceed from here? > >>> > >>> Thanks and best wishes! > >>> Johannes > >>> > >>> > >>> _______________________________________________ > >>> Freesurfer mailing list > >>> Freesurfer@nmr.mgh.harvard.edu > >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >>> > >> _______________________________________________ > >> Freesurfer mailing list > >> Freesurfer@nmr.mgh.harvard.edu > >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > >> > >> > >> The information in this e-mail is intended only for the person to whom > it is > >> addressed. If you believe this e-mail was sent to you in error and the > e-mail > >> contains patient information, please contact the Partners Compliance > HelpLine at > >> http://www.partners.org/complianceline . If the e-mail was sent to you > in error > >> but does not contain patient information, please contact the sender and > properly > >> dispose of the e-mail. > >> > >> > >> > > _______________________________________________ > > Freesurfer mailing list > > Freesurfer@nmr.mgh.harvard.edu > > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > > > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > -- *Felipe Picon, MD, MSc* Child and Adolescent Psychiatrist ===================================================== ADHD Neuroimaging Researcher at the Adult ADHD outpatient research program PRODAH-A <http://www6.ufrgs.br/prodah/prodah/e-equipe.html> - HCPA <http://www.hcpa.ufrgs.br> - UFRGS <http://www.ufrgs.br> Porto Alegre - RS - Brazil Vice-Coordinator of the Technology Addiction Study Group - GEAT <http://dependenciadetecnologia.org/quem-somos/> Secretary of the Early Career Psychiatrists Section - World Psychiatric Association <http://www.wpanet.org/detail.php?section_id=11&content_id=1703> Corresponding Member of the American Academy of Child and Adolescent Psychiatry - AACAP ===================================================== Web based CV <http://lattes.cnpq.br/3896757276389918> Google Scholar Profile <http://scholar.google.com/citations?user=TxI0ZYYAAAAJ&hl=en> felipepi...@gmail.com
_______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
