Odd. What happens if you type: setenv LD_LIBRARY_PATH /usr/local/freesurfer/lib/vtk/lib/vtk-5.6
Right before typing the 'freeview' command? Does it work then? -Zeke > On Apr 6, 2015, at 5:34 PM, Johannes Kaufhold <johannes.kaufh...@outlook.com> > wrote: > > Hi Zeke, > > Yes, I'm attempting to open freeview in the same terminal window in > which I have sourced SetUpFreeSurfer.csh. > > Here's the output from ls -l > $FREESURFER_HOME/lib/vtk/lib/vtk-5.6/*libvtkverdict* > > lrwxrwxrwx 1 root root 22 May 13 2013 > /usr/local/freesurfer/lib/vtk/lib/vtk-5.6/libvtkverdict.so -> > libvtkverdict.so.5.6.0 > lrwxrwxrwx 1 root root 22 May 13 2013 > /usr/local/freesurfer/lib/vtk/lib/vtk-5.6/libvtkverdict.so.5.6 -> > libvtkverdict.so.5.6.0 > -rwsrwsr-t 1 root root 189017 Aug 17 2010 > /usr/local/freesurfer/lib/vtk/lib/vtk-5.6/libvtkverdict.so.5.6.0 > > Best, > Johannes > >> On 06/04/15 21:48, Z K wrote: >> Hello Johannes, >> >> You are attempting to open freeview *in the same window* that you >> sourced SetUpFreeSurfer.csh(sh), correct? Also, can you tell me what the >> output of the terminal is when you type the following command: >> >> ls -l $FREESURFER_HOME/lib/vtk/lib/vtk-5.6/*libvtkverdict* >> >> -Zeke >> >>> On 04/06/2015 04:32 PM, Johannes Kaufhold wrote: >>> Hi all, >>> >>> I'm super new to Freesurfer. I just set it up on my computer earlier >>> today, following the official wiki on harvard.edu/fswiki... >>> >>> My system: >>> - Ubuntu 14.04 LTS (up to date) >>> - Tcsh installed >>> - Freesurfer version: >>> freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0.tar.gz >>> <ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/5.3.0/freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0.tar.gz> >>> - Mathlab not installed >>> >>> Sourcing the SetUpFreeSurfer.csh(sh) script worked fine and license.txt >>> is in $FREESURFER_HOME. >>> >>> When trying to pull and view the sample data by entering the below in >>> the terminal (tcsh) >>> >>> freeview -v $SUBJECTS_DIR/bert/mri/brainmask.mgz -v >>> $SUBJECTS_DIR/bert/mri/aseg.mgz:colormap=lut:opacity=0.2 -f >>> $SUBJECTS_DIR/bert/surf/lh.white:edgecolor=yellow -f >>> $SUBJECTS_DIR/bert/surf/rh.white:edgecolor=yellow -f >>> $SUBJECTS_DIR/bert/surf/lh.pial:annot=aparc:edgecolor=red -f >>> $SUBJECTS_DIR/bert/surf/rh.pial:annot=aparc:edgecolor=red >>> >>> I'm getting the following error message* >>> ** >>> **freeview.bin: error while loading shared libraries: >>> libvtkverdict.so.5.6: cannot open shared object file: No such file or >>> directory* >>> >>> I was searching for the missing file in Aptitude and on the internet, >>> but couldn't manage to find it. >>> >>> Any suggestions how to proceed from here? >>> >>> Thanks and best wishes! >>> Johannes >>> >>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it is >> addressed. If you believe this e-mail was sent to you in error and the e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you in >> error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
