Hi Zeke, Yes, I'm attempting to open freeview in the same terminal window in which I have sourced SetUpFreeSurfer.csh.
Here's the output from ls -l $FREESURFER_HOME/lib/vtk/lib/vtk-5.6/*libvtkverdict* lrwxrwxrwx 1 root root 22 May 13 2013 /usr/local/freesurfer/lib/vtk/lib/vtk-5.6/libvtkverdict.so -> libvtkverdict.so.5.6.0 lrwxrwxrwx 1 root root 22 May 13 2013 /usr/local/freesurfer/lib/vtk/lib/vtk-5.6/libvtkverdict.so.5.6 -> libvtkverdict.so.5.6.0 -rwsrwsr-t 1 root root 189017 Aug 17 2010 /usr/local/freesurfer/lib/vtk/lib/vtk-5.6/libvtkverdict.so.5.6.0 Best, Johannes On 06/04/15 21:48, Z K wrote: > Hello Johannes, > > You are attempting to open freeview *in the same window* that you > sourced SetUpFreeSurfer.csh(sh), correct? Also, can you tell me what the > output of the terminal is when you type the following command: > > ls -l $FREESURFER_HOME/lib/vtk/lib/vtk-5.6/*libvtkverdict* > > -Zeke > > On 04/06/2015 04:32 PM, Johannes Kaufhold wrote: >> Hi all, >> >> I'm super new to Freesurfer. I just set it up on my computer earlier >> today, following the official wiki on harvard.edu/fswiki... >> >> My system: >> - Ubuntu 14.04 LTS (up to date) >> - Tcsh installed >> - Freesurfer version: >> freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0.tar.gz >> <ftp://surfer.nmr.mgh.harvard.edu/pub/dist/freesurfer/5.3.0/freesurfer-Linux-centos6_x86_64-stable-pub-v5.3.0.tar.gz> >> - Mathlab not installed >> >> Sourcing the SetUpFreeSurfer.csh(sh) script worked fine and license.txt >> is in $FREESURFER_HOME. >> >> When trying to pull and view the sample data by entering the below in >> the terminal (tcsh) >> >> freeview -v $SUBJECTS_DIR/bert/mri/brainmask.mgz -v >> $SUBJECTS_DIR/bert/mri/aseg.mgz:colormap=lut:opacity=0.2 -f >> $SUBJECTS_DIR/bert/surf/lh.white:edgecolor=yellow -f >> $SUBJECTS_DIR/bert/surf/rh.white:edgecolor=yellow -f >> $SUBJECTS_DIR/bert/surf/lh.pial:annot=aparc:edgecolor=red -f >> $SUBJECTS_DIR/bert/surf/rh.pial:annot=aparc:edgecolor=red >> >> I'm getting the following error message* >> ** >> **freeview.bin: error while loading shared libraries: >> libvtkverdict.so.5.6: cannot open shared object file: No such file or >> directory* >> >> I was searching for the missing file in Aptitude and on the internet, >> but couldn't manage to find it. >> >> Any suggestions how to proceed from here? >> >> Thanks and best wishes! >> Johannes >> >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
