Hi Lee Thank you for your response. I have a follow up question- After running recon-all -all, I found the parahippocampal cortex and entorhinal cortex under two files- wmparc.mgz and aparc+ages.mgz. What is the difference between the two? Also, I haven't been able to find perirhinal cortex under any of the files. I wonder why?
On Mon, Aug 3, 2015 at 5:22 PM, Lee Tirrell <ltirr...@nmr.mgh.harvard.edu> wrote: > Hi Priyanka, > > These are all automatically created automatically by running recon-all > -all. > > Best, > Lee > > > On Sat, 1 Aug 2015, Priyanka Mehta wrote: > > Hi >> Please excuse my extremely basic question. >> >> I would like to perform segmentation on my T1 image to obtain the >> following: >> >> a. Entorhinal Cortex >> >> b. Perirhinal Cortex >> >> c. Parahippocampal Cortex >> >> Is there a specific command I should be using in the 6.0 dev version? Or >> should I just be using recon-all -all ? >> >> Best, >> Priyanka Mehta >> >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it > is > addressed. If you believe this e-mail was sent to you in error and the > e-mail > contains patient information, please contact the Partners Compliance > HelpLine at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > >
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