Can you send your command line, full terminal output, and your long.qdec.table.dat file?
On 8/3/15 10:31 AM, Clara Kühn wrote: > ok, it can only access the file if I type > ls /scr/etsch2/kids/ct/qdec/long.qdec.table.dat (so with the forward slash) > > but if I then use that path for the mris_preproc command I get > nsubjects = 22 > ERROR: cannot find /scr/etsch2/kids/ct/.long. > > > > ----- Ursprüngliche Mail ----- > Von: "Douglas Greve" <gr...@nmr.mgh.harvard.edu> > An: freesurfer@nmr.mgh.harvard.edu > Gesendet: Montag, 3. August 2015 16:23:48 > Betreff: Re: [Freesurfer] cannot find qdec file > > that is probably not the full path. Try typing > > ls scr/etsch2/kids/ct/qdec/long.qdec.table.dat > > If it says it cannot find the file, then it is not the full path. Maybe > you need a forward slash (ie, "/") in the beginning? > > On 8/3/15 10:18 AM, Clara Kühn wrote: >> then I get the error ERROR: cannot find >> scr/etsch2/kids/ct/qdec/long.qdec.table.dat >> >> I had tried that. Sorry, no luck with that. >> >> ----- Ursprüngliche Mail ----- >> Von: "Douglas Greve" <gr...@nmr.mgh.harvard.edu> >> An: freesurfer@nmr.mgh.harvard.edu >> Gesendet: Montag, 3. August 2015 16:16:58 >> Betreff: Re: [Freesurfer] cannot find qdec file >> >> you have to give it the entire path to the file >> >> On 8/3/15 10:14 AM, Clara Kühn wrote: >>> Dear FS-experts, >>> >>> I want to analyze my longitudinal data with your suggested LME models and >>> am therefore following the walkthrough by J. Bernal. I get an error though >>> very early on when using the command >>> mris_preproc --qdec-long qdec/long.qdec.table.dat --target >>> 7kids_template_sc1 --hemi lh --meas thickness --out qdec/lh.thickness.mgh >>> >>> It always says >>> ERROR: cannot find qdec/long.qdec.table.dat >>> >>> Yes, the walkthrough asks for an input file named just qdec.table.dat, but >>> I haven't got that. So far in the longitudinal stream there are >>> long.qdec.table.dat and cross.qdec.table.dat files but no simple >>> qdec.table.dat files. So I figured I'd use the long.qdec file because FS >>> needs to get the information about the long timepoints. >>> But it cannot find the file, even though I see it. I've also tried copying >>> the long.qdec file and naming it qdec.table.dat but it still doesn't find >>> it. >>> >>> The entire path to the file is scr/etsch2/kids/ct/qdec/long.qdec.table.dat >>> and my SUBJECTS_DIR is scr/etsch2/kids/ct >>> >>> Can you help me see what I'm missing? >>> Thanks a lot in advance, >>> Clara >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> >> The information in this e-mail is intended only for the person to whom it is >> addressed. If you believe this e-mail was sent to you in error and the e-mail >> contains patient information, please contact the Partners Compliance >> HelpLine at >> http://www.partners.org/complianceline . If the e-mail was sent to you in >> error >> but does not contain patient information, please contact the sender and >> properly >> dispose of the e-mail. >> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
