Thanks Bruce. I'll try this. The problem is I have no anatomical images for my subjects. What can I use as input volume in mri_extract_label?
I want use this mask to extract time series afterwards. Thanks again. Best wishes Andre ________________________________________ Von: freesurfer-boun...@nmr.mgh.harvard.edu [freesurfer-boun...@nmr.mgh.harvard.edu]" im Auftrag von "Bruce Fischl [fis...@nmr.mgh.harvard.edu] Gesendet: Mittwoch, 15. April 2015 18:18 An: Freesurfer support list Betreff: Re: [Freesurfer] midbrain mask p.s. sorry, maybe not brainstem, maybe "ventral diencephalon" On Wed, 15 Apr 2015, André Schmidt wrote: > Dear FS experts, > Can you please guide me how to create a binary mask of the left midbrain > (VTA, SN)? > > Thanks for your help > Andre > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
