Dear FreeSurfers, I need to extract mean thickness from a manually defined label which is now in subjid/label (named mpfc.label) I tried with mris_anatomical_stats using the -l flag but here is what I got
iMac-di-Mac:label fabriziopiras$ mris_anatomical_stats -l subjid/label/rh.cortex.label -b subjid lh limiting computations to label subjid/label/rh.cortex.label. reading volume /Volumes/immagini/freesurfer/subjects/subjid/mri/wm.mgz... reading input surface /Volumes/immagini/freesurfer/subjects/subjid/surf/lh.white... reading input pial surface /Volumes/immagini/freesurfer/subjects/subjid/surf/lh.pial... reading input white surface /Volumes/immagini/freesurfer/subjects/subjid/surf/lh.white... No such file or directory mris_anatomical_stats: could not open label file subjid/label/rh.cortex.label No such file or directory subjid: could not read label file `<ks? The problem does not seem to depend on the label I created since I also tried with rh.cortex.label which was done by freesurfer itself with same results Does anybody know why? Thank you in advance -------------------------- Fabrizio Piras PhD -------------------------- Laboratorio di Neuropsichiatria Dipartimento di Neurologia Clinica e Comportamentale IRCCS Fondazione Santa Lucia via Ardeatina 306 - 00179 Roma Tel. +39 (0)6 51501363 Fax +39 (0)6 51501213 web: http://www.neuropsichiatrialab.com _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
