Dear Freesurfers, Sorry for this newbie question: I'm preparing my data for a group analysis using mris_preproc:
mris_preproc --fsgd nocov.fsgd --target fsaverage --hemi lh --meas thickness --out lh.nocov.thickness.00.mgh I have 120 subjects in total and my FSGD file simply looks like this GroupDescriptorFile 1 Class Group1 Class Group2 Input pt01 Group1 Input pt02 Group1 [..rest of lines left out..] Input ct01 Group2 Input ct02 Group2 [..rest of lines left out..] When I run mris_preproc, the program only assembles the first two subjects in group 1 and the first subject in group 2, i.e. 3 subjects not 120. I have run -make all on all subjects and there is nothing to make. I'm running ver. 5.3.0 What is wrong? All the best, Anders _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
