Thanks. The mris_apply_reg works like a charm. Just to clarify for anyone interested, these commands register both left and right .mgh files to lh fsaverage_sym.
Cheers, Konrad > On 11 Feb 2015, at 23:05, Douglas Greve <gr...@nmr.mgh.harvard.edu> wrote: > > btw, to check, you can run this on the thicknesses and compare to what > you get with mris_preproc > > On 2/11/15 6:01 PM, Douglas Greve wrote: >> Probably easier to use mris_apply_reg, something like >> >> mris_apply_reg --src lh.w-g.pct.mgh --trg xhemi.lh.w-g.pct.mgh \ >> --streg $SUBJECTS_DIR/$subject/surf/lh.fsaverage_sym.sphere.reg \ >> $SUBJECTS_DIR/fsaverage_sym/surf/lh.sphere.reg >> >> mris_apply_reg --src rh.w-g.pct.mgh --trg xhemi.rh.w-g.pct.mgh \ >> --streg $SUBJECTS_DIR/$subject/xhemi/surf/lh.fsaverage_sym.sphere.reg \ >> $SUBJECTS_DIR/fsaverage_sym/surf/lh.sphere.reg >> >> In the 2nd command line (for rh), lh.fsaverage_sym.sphere.reg is used. >> This is intentional; the left hemis in the xhemi folder are actually >> right hemis. >> >> doug >> >> >> On 2/11/15 4:12 PM, Bruce Fischl wrote: >>> Hi Konrad >>> >>> you should be able to do this with mri_surf2surf, although the syntax >>> might be tricky. >>> >>> cheers >>> Bruce >>> On Mon, 9 Feb 2015, Konrad Wagstyl wrote: >>> >>>> Hi all, >>>> >>>> We're having some trouble using interhemispheric registration. It works >>>> fine for files that are automatically registered eg thickness, volume etc. >>>> but not for mgh files, like ?h.w-g.pct.mgh. >>>> Is there a way of adding files to xhemi/surf/ so that other surfaces files >>>> can be compared between hemispheres? >>>> >>>> Thanks, >>>> Konrad >>>> _______________________________________________ >>>> Freesurfer mailing list >>>> Freesurfer@nmr.mgh.harvard.edu >>>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>>> >>>> >>>> >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> > > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > > The information in this e-mail is intended only for the person to whom it is > addressed. If you believe this e-mail was sent to you in error and the e-mail > contains patient information, please contact the Partners Compliance HelpLine > at > http://www.partners.org/complianceline . If the e-mail was sent to you in > error > but does not contain patient information, please contact the sender and > properly > dispose of the e-mail. > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer
