btw, to check, you can run this on the thicknesses and compare to what you get with mris_preproc
On 2/11/15 6:01 PM, Douglas Greve wrote: > Probably easier to use mris_apply_reg, something like > > mris_apply_reg --src lh.w-g.pct.mgh --trg xhemi.lh.w-g.pct.mgh \ > --streg $SUBJECTS_DIR/$subject/surf/lh.fsaverage_sym.sphere.reg \ > $SUBJECTS_DIR/fsaverage_sym/surf/lh.sphere.reg > > mris_apply_reg --src rh.w-g.pct.mgh --trg xhemi.rh.w-g.pct.mgh \ > --streg $SUBJECTS_DIR/$subject/xhemi/surf/lh.fsaverage_sym.sphere.reg \ > $SUBJECTS_DIR/fsaverage_sym/surf/lh.sphere.reg > > In the 2nd command line (for rh), lh.fsaverage_sym.sphere.reg is used. > This is intentional; the left hemis in the xhemi folder are actually > right hemis. > > doug > > > On 2/11/15 4:12 PM, Bruce Fischl wrote: >> Hi Konrad >> >> you should be able to do this with mri_surf2surf, although the syntax >> might be tricky. >> >> cheers >> Bruce >> On Mon, 9 Feb 2015, Konrad Wagstyl wrote: >> >>> Hi all, >>> >>> We're having some trouble using interhemispheric registration. It works >>> fine for files that are automatically registered eg thickness, volume etc. >>> but not for mgh files, like ?h.w-g.pct.mgh. >>> Is there a way of adding files to xhemi/surf/ so that other surfaces files >>> can be compared between hemispheres? >>> >>> Thanks, >>> Konrad >>> _______________________________________________ >>> Freesurfer mailing list >>> Freesurfer@nmr.mgh.harvard.edu >>> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >>> >>> >>> >> _______________________________________________ >> Freesurfer mailing list >> Freesurfer@nmr.mgh.harvard.edu >> https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer >> >> > _______________________________________________ > Freesurfer mailing list > Freesurfer@nmr.mgh.harvard.edu > https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer > > _______________________________________________ Freesurfer mailing list Freesurfer@nmr.mgh.harvard.edu https://mail.nmr.mgh.harvard.edu/mailman/listinfo/freesurfer The information in this e-mail is intended only for the person to whom it is addressed. If you believe this e-mail was sent to you in error and the e-mail contains patient information, please contact the Partners Compliance HelpLine at http://www.partners.org/complianceline . If the e-mail was sent to you in error but does not contain patient information, please contact the sender and properly dispose of the e-mail.
